RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 GAGE12FP0CL80 117 aa11.74□□□□□ -0.53
ZNF541-201ENST00000263351 GAGE12GP0CL81 117 aa11.74□□□□□ -0.53
ZNF541-201ENST00000263351 GAGE12IP0CL82 117 aa11.74□□□□□ -0.53
ZNF541-201ENST00000263351 CHCHD5Q9BSY4 110 aa11.74□□□□□ -0.53
ZNF541-201ENST00000263351 SMCR5Q8TEV8 140 aa11.73□□□□□ -0.53
ZNF541-201ENST00000263351 K7EQD1 137 aa11.73□□□□□ -0.53
ZNF541-201ENST00000263351 YAE1D1Q9NRH1 226 aa11.73□□□□□ -0.53
ZNF541-201ENST00000263351 CDC42SE2Q9NRR3 84 aa11.72□□□□□ -0.53
ZNF541-201ENST00000263351 H3BT86 120 aa11.72□□□□□ -0.53
ZNF541-201ENST00000263351 GIG44P09565 113 aaPredicted RBP11.72□□□□□ -0.53
ZNF541-201ENST00000263351 IFITM1P13164 125 aa11.72□□□□□ -0.53
ZNF541-201ENST00000263351 HERVK_113P63121 156 aa11.72□□□□□ -0.53
ZNF541-201ENST00000263351 DNAJC30Q96LL9 226 aa11.72□□□□□ -0.53
ZNF541-201ENST00000263351 C11orf68Q9H3H3 251 aaKnown RBP11.72□□□□□ -0.53
ZNF541-201ENST00000263351 GAGE6Q13070 117 aa11.71□□□□□ -0.53
ZNF541-201ENST00000263351 C22orf24Q9Y442 160 aa11.71□□□□□ -0.53
ZNF541-201ENST00000263351 C9orf129Q5T035 196 aaKnown RBP11.71□□□□□ -0.54
ZNF541-201ENST00000263351 RPL36AP83881 106 aaKnown RBP11.7□□□□□ -0.54
ZNF541-201ENST00000263351 CIRBPQ14011 172 aaKnown RBP11.7□□□□□ -0.54
ZNF541-201ENST00000263351 RPL36ALQ969Q0 106 aaKnown RBP11.7□□□□□ -0.54
ZNF541-201ENST00000263351 ESM1Q9NQ30 184 aa11.7□□□□□ -0.54
ZNF541-201ENST00000263351 IGLV4-60A0A075B6I1 120 aa11.7□□□□□ -0.54
ZNF541-201ENST00000263351 TIMM17BO60830 172 aa11.69□□□□□ -0.54
ZNF541-201ENST00000263351 DAZ2Q13117 558 aaKnown RBP11.69□□□□□ -0.54
ZNF541-201ENST00000263351 DAZ4Q86SG3 579 aaKnown RBP11.69□□□□□ -0.54
ZNF541-201ENST00000263351 IL17DQ8TAD2 202 aa11.69□□□□□ -0.54
ZNF541-201ENST00000263351 DAZ3Q9NR90 486 aaKnown RBP11.69□□□□□ -0.54
ZNF541-201ENST00000263351 HIVEP2P31629 2446 aa11.69□□□□□ -0.54
ZNF541-201ENST00000263351 ANK3Q12955 4377 aaKnown RBP11.68□□□□□ -0.54
ZNF541-201ENST00000263351 COX7A2LO14548 114 aa11.68□□□□□ -0.54
ZNF541-201ENST00000263351 LINC01600Q96MT4 127 aa11.68□□□□□ -0.54
ZNF541-201ENST00000263351 LINC00337Q8N6G1 96 aa11.68□□□□□ -0.54
ZNF541-201ENST00000263351 TRGV2A0A075B6R0 118 aa11.67□□□□□ -0.54
ZNF541-201ENST00000263351 PLAC8L1A1L4L8 177 aa11.67□□□□□ -0.54
ZNF541-201ENST00000263351 SHISA2Q6UWI4 295 aa11.67□□□□□ -0.54
ZNF541-201ENST00000263351 MIR7-3HGQ8N6C7 128 aa11.67□□□□□ -0.54
ZNF541-201ENST00000263351 WFDC11Q8NEX6 87 aa11.67□□□□□ -0.54
ZNF541-201ENST00000263351 CCL24O00175 119 aa11.66□□□□□ -0.54
ZNF541-201ENST00000263351 DNAJC9-AS1A6NH13 148 aa11.66□□□□□ -0.54
ZNF541-201ENST00000263351 IGKV2-28A0A075B6P5 120 aa11.65□□□□□ -0.54
ZNF541-201ENST00000263351 IGKV2D-28P01615 120 aa11.65□□□□□ -0.54
ZNF541-201ENST00000263351 PFN2P35080 140 aa11.65□□□□□ -0.54
ZNF541-201ENST00000263351 C5orf38Q86SI9 138 aa11.65□□□□□ -0.54
ZNF541-201ENST00000263351 UBE2L6O14933 153 aa11.65□□□□□ -0.55
ZNF541-201ENST00000263351 ATP5G1P05496 136 aa11.65□□□□□ -0.55
ZNF541-201ENST00000263351 BAALC-AS2P0C853 105 aa11.65□□□□□ -0.55
ZNF541-201ENST00000263351 CLPSL2Q6UWE3 100 aa11.65□□□□□ -0.55
ZNF541-201ENST00000263351 KRTAP1-3Q8IUG1 177 aa11.65□□□□□ -0.55
ZNF541-201ENST00000263351 DEFB113Q30KQ7 82 aa11.64□□□□□ -0.55
ZNF541-201ENST00000263351 A0A087WYN8 130 aa11.63□□□□□ -0.55
ZNF541-201ENST00000263351 A0A096LPF7 62 aa11.63□□□□□ -0.55
ZNF541-201ENST00000263351 TMEM243Q9BU79 118 aa11.63□□□□□ -0.55
ZNF541-201ENST00000263351 DEFB121Q5J5C9 76 aa11.62□□□□□ -0.55
ZNF541-201ENST00000263351 FAM236AA0A1B0GUQ0 79 aa11.62□□□□□ -0.55
ZNF541-201ENST00000263351 FAM236BA0A1B0GV22 79 aa11.62□□□□□ -0.55
ZNF541-201ENST00000263351 PDZD2O15018 2839 aa11.61□□□□□ -0.55
ZNF541-201ENST00000263351 NOTCH2Q04721 2471 aa11.61□□□□□ -0.55
ZNF541-201ENST00000263351 SLPIP03973 132 aa11.61□□□□□ -0.55
ZNF541-201ENST00000263351 LINC00158P58513 81 aa11.61□□□□□ -0.55
ZNF541-201ENST00000263351 TRGV4A0A0C4DH28 118 aa11.6□□□□□ -0.55
ZNF541-201ENST00000263351 DEFB130BP0DP73 79 aa11.6□□□□□ -0.55
ZNF541-201ENST00000263351 DEFB130AP0DP74 79 aa11.6□□□□□ -0.55
ZNF541-201ENST00000263351 COX7B2Q8TF08 81 aa11.6□□□□□ -0.55
ZNF541-201ENST00000263351 SND1-IT1Q9HBX3 110 aa11.6□□□□□ -0.55
ZNF541-201ENST00000263351 GAGE2AQ6NT46 116 aa11.59□□□□□ -0.55
ZNF541-201ENST00000263351 TENM1Q9UKZ4 2725 aa11.59□□□□□ -0.55
ZNF541-201ENST00000263351 SMIM11BQ8TCY0 68 aa11.59□□□□□ -0.55
ZNF541-201ENST00000263351 TRBV10-1A0A0K0K1A3 114 aa11.58□□□□□ -0.56
ZNF541-201ENST00000263351 Q6Q795 121 aa11.58□□□□□ -0.56
ZNF541-201ENST00000263351 CSDC2Q9Y534 153 aaKnown RBP11.58□□□□□ -0.56
ZNF541-201ENST00000263351 TRRAPQ9Y4A5 3859 aa11.58□□□□□ -0.56
ZNF541-201ENST00000263351 CCL18P55774 89 aa11.58□□□□□ -0.56
ZNF541-201ENST00000263351 PRR3P79522 188 aaKnown RBP11.58□□□□□ -0.56
ZNF541-201ENST00000263351 Q8N3U1 123 aa11.58□□□□□ -0.56
ZNF541-201ENST00000263351 FAM19A3Q7Z5A8 133 aa11.57□□□□□ -0.56
ZNF541-201ENST00000263351 CRPP02741 224 aa11.56□□□□□ -0.56
ZNF541-201ENST00000263351 FASNP49327 2511 aaKnown RBP11.56□□□□□ -0.56
ZNF541-201ENST00000263351 FAM240AA0A1B0GVK7 77 aa11.56□□□□□ -0.56
ZNF541-201ENST00000263351 C14orf132Q9NPU4 83 aa11.56□□□□□ -0.56
ZNF541-201ENST00000263351 XCL1P47992 114 aa11.55□□□□□ -0.56
ZNF541-201ENST00000263351 SMIM20Q8N5G0 67 aa11.55□□□□□ -0.56
ZNF541-201ENST00000263351 C19orf73Q9NVV2 129 aa11.55□□□□□ -0.56
ZNF541-201ENST00000263351 IGHV3OR16-9A0A0B4J2B5 98 aa11.54□□□□□ -0.56
ZNF541-201ENST00000263351 FHL2Q14192 279 aa11.54□□□□□ -0.56
ZNF541-201ENST00000263351 HELZ2Q9BYK8 2649 aaKnown RBP11.54□□□□□ -0.56
ZNF541-201ENST00000263351 CSNK1G2-AS1Q8NCQ2 148 aa11.54□□□□□ -0.56
ZNF541-201ENST00000263351 OR13C6PQ8NH95 151 aa11.54□□□□□ -0.56
ZNF541-201ENST00000263351 TRBV7-7A0A0K0K1E9 115 aa11.53□□□□□ -0.56
ZNF541-201ENST00000263351 LINC01006Q8NI28 216 aa11.53□□□□□ -0.56
ZNF541-201ENST00000263351 DEFB4AO15263 64 aa11.53□□□□□ -0.56
ZNF541-201ENST00000263351 TRBV6-8A0A0A6YYG3 113 aa11.52□□□□□ -0.56
ZNF541-201ENST00000263351 LECT2O14960 151 aa11.52□□□□□ -0.56
ZNF541-201ENST00000263351 TRACP01848 142 aa11.52□□□□□ -0.56
ZNF541-201ENST00000263351 MALP21145 153 aa11.52□□□□□ -0.56
ZNF541-201ENST00000263351 ZNF843Q8N446 348 aa11.52□□□□□ -0.56
ZNF541-201ENST00000263351 SPATA3Q8NHX4 192 aa11.52□□□□□ -0.56
ZNF541-201ENST00000263351 NCR3O14931 201 aa11.52□□□□□ -0.57
ZNF541-201ENST00000263351 PAX4O43316 350 aa11.52□□□□□ -0.57
ZNF541-201ENST00000263351 HERV-K104P63124 156 aa11.52□□□□□ -0.57
ZNF541-201ENST00000263351 RPL28P46779 137 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 86.2 ms