RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PRO1854Q9UHT4 67 aa7.29□□□□□ -1.24
LIG3-216ENST00000593099 TRIOO75962 3097 aa7.29□□□□□ -1.24
LIG3-216ENST00000593099 A0A0B4J2C4 111 aa7.29□□□□□ -1.24
LIG3-216ENST00000593099 hADV29S1A0JD25 119 aa7.29□□□□□ -1.24
LIG3-216ENST00000593099 MRGPRG-AS1Q2M3A8 158 aa7.29□□□□□ -1.24
LIG3-216ENST00000593099 PRIMA1Q86XR5 153 aa7.29□□□□□ -1.24
LIG3-216ENST00000593099 GATA1P15976 413 aaPredicted RBP7.28□□□□□ -1.24
LIG3-216ENST00000593099 FUSP35637 526 aaKnown RBP eCLIP7.28□□□□□ -1.24
LIG3-216ENST00000593099 GTSF1Q8WW33 167 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 RPL39LQ96EH5 51 aaKnown RBP7.28□□□□□ -1.24
LIG3-216ENST00000593099 TP53TG3Q9ULZ0 132 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 MYMXA0A1B0GTQ4 84 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGHV3-30P01768 117 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGHV3-33P01772 117 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGLC6P0CF74 106 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGHV3-30-3P0DP02 117 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGHV3-30-5P0DP03 117 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 EDN2P20800 178 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.28□□□□□ -1.24
LIG3-216ENST00000593099 TRAV10A0A0B4J240 114 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 IGKV2-29A2NJV5 120 aaPredicted RBP7.28□□□□□ -1.24
LIG3-216ENST00000593099 PPDPFQ9H3Y8 114 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 UNC80Q8N2C7 3258 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 C20orf197Q8N268 126 aa7.28□□□□□ -1.24
LIG3-216ENST00000593099 FRMD6-AS1P0C7T7 363 aa7.27□□□□□ -1.25
LIG3-216ENST00000593099 MLST8Q9BVC4 326 aa7.27□□□□□ -1.25
LIG3-216ENST00000593099 MGAQ8IWI9 3026 aa7.27□□□□□ -1.25
LIG3-216ENST00000593099 TM2D2Q9BX73 214 aa7.27□□□□□ -1.25
LIG3-216ENST00000593099 TDRG1Q3Y452 100 aa7.27□□□□□ -1.25
LIG3-216ENST00000593099 JPT2Q9H910 190 aa7.27□□□□□ -1.25
LIG3-216ENST00000593099 FLNAP21333 2647 aaKnown RBP7.26□□□□□ -1.25
LIG3-216ENST00000593099 BPTFQ12830 3046 aa7.26□□□□□ -1.25
LIG3-216ENST00000593099 ITPR3Q14573 2671 aa7.26□□□□□ -1.25
LIG3-216ENST00000593099 IGKV3D-7A0A0C4DH55 119 aa7.26□□□□□ -1.25
LIG3-216ENST00000593099 VSIG2Q96IQ7 327 aa7.26□□□□□ -1.25
LIG3-216ENST00000593099 XCL1P47992 114 aa7.26□□□□□ -1.25
LIG3-216ENST00000593099 AKAP13Q12802 2813 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 KLLNB2CW77 178 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 LINC01545Q5VT33 79 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 KRTAP1-3Q8IUG1 177 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 IGLV2-8P01709 118 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 ZFP2Q6ZN57 461 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 CDH23Q9H251 3354 aa7.25□□□□□ -1.25
LIG3-216ENST00000593099 RNASE13Q5GAN3 156 aaKnown RBP7.24□□□□□ -1.25
LIG3-216ENST00000593099 LINC00322Q6ZN03 302 aaPredicted RBP7.24□□□□□ -1.25
LIG3-216ENST00000593099 LINC00643Q86TS7 51 aa7.24□□□□□ -1.25
LIG3-216ENST00000593099 DSPP15924 2871 aaKnown RBP7.24□□□□□ -1.25
LIG3-216ENST00000593099 IGSF10Q6WRI0 2623 aa7.24□□□□□ -1.25
LIG3-216ENST00000593099 COA6Q5JTJ3 125 aaKnown RBP7.24□□□□□ -1.25
LIG3-216ENST00000593099 MRPS12O15235 138 aaKnown RBP7.23□□□□□ -1.25
LIG3-216ENST00000593099 ATP5EP56381 51 aaPredicted RBP7.23□□□□□ -1.25
LIG3-216ENST00000593099 KLK12Q9UKR0 248 aa7.23□□□□□ -1.25
LIG3-216ENST00000593099 A6NED7 52 aa7.22□□□□□ -1.25
LIG3-216ENST00000593099 IGLV10-54A0A075B6I4 117 aa7.22□□□□□ -1.25
LIG3-216ENST00000593099 F8VRH5 84 aa7.22□□□□□ -1.25
LIG3-216ENST00000593099 A0A0J9YWU9 116 aa7.22□□□□□ -1.25
LIG3-216ENST00000593099 IGLV2-11P01706 119 aa7.22□□□□□ -1.25
LIG3-216ENST00000593099 FHL3Q13643 280 aa7.22□□□□□ -1.25
LIG3-216ENST00000593099 WDFY4Q6ZS81 3184 aa7.21□□□□□ -1.25
LIG3-216ENST00000593099 UBE2BP63146 152 aa7.21□□□□□ -1.25
LIG3-216ENST00000593099 CHD6Q8TD26 2715 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 TRBV6-4A0A1B0GX49 114 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 UBE2AP49459 152 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 CRIP1P50238 77 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 NANOS2P60321 138 aaKnown RBP7.21□□□□□ -1.26
LIG3-216ENST00000593099 C5orf38Q86SI9 138 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 SLC25A29Q8N8R3 303 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 PRR9Q5T870 116 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 CFAP126Q5VTH2 177 aa7.21□□□□□ -1.26
LIG3-216ENST00000593099 MRPL35Q9NZE8 188 aaKnown RBP7.21□□□□□ -1.26
LIG3-216ENST00000593099 ATRQ13535 2644 aa7.2□□□□□ -1.26
LIG3-216ENST00000593099 LGALS9CQ6DKI2 356 aa7.2□□□□□ -1.26
LIG3-216ENST00000593099 COX7A2LO14548 114 aa7.2□□□□□ -1.26
LIG3-216ENST00000593099 SZT2Q5T011 3432 aa7.2□□□□□ -1.26
LIG3-216ENST00000593099 CFC1BP0CG36 223 aa7.2□□□□□ -1.26
LIG3-216ENST00000593099 CFC1P0CG37 223 aa7.2□□□□□ -1.26
LIG3-216ENST00000593099 LEPROTO15243 131 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 NHLRC4P0CG21 123 aaPredicted RBP7.19□□□□□ -1.26
LIG3-216ENST00000593099 COX7CP15954 63 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 P0DMU3 169 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 FAM231AP0DMU4 169 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 FAM231CP0DMU5 169 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 KPRPQ5T749 579 aaPredicted RBP7.19□□□□□ -1.26
LIG3-216ENST00000593099 MP68P56378 58 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 NKAPP1Q8N9T2 125 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 DSCR8Q96T75 97 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 NDUFA12Q9UI09 145 aa7.19□□□□□ -1.26
LIG3-216ENST00000593099 BEAN1Q3B7T3 259 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 BAHCC1Q9P281 2608 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 LINC01620Q4KN68 170 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 CAMK2N2Q96S95 79 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 U3KQK5 164 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 CHKB-CPT1BH3BT56 60 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 NXPH4O95158 308 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 BAALC-AS2P0C853 105 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 KRTAP1-1Q07627 177 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 C4orf48Q5BLP8 95 aa7.18□□□□□ -1.26
LIG3-216ENST00000593099 TET2Q6N021 2002 aaPredicted RBP7.18□□□□□ -1.26
LIG3-216ENST00000593099 RNASE3P12724 160 aaKnown RBP7.18□□□□□ -1.26
LIG3-216ENST00000593099 C20orf203Q8NBC4 194 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms