RNA–Protein interactions for RNA: ENST00000575338.1

SMG6-217, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-217ENST00000575338 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.85□□□□□ -1.63
SMG6-217ENST00000575338 IGHV3-38A0A0C4DH36 116 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 A0A0J9YXV3 536 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 IGKV2-29A2NJV5 120 aaPredicted RBP4.85□□□□□ -1.63
SMG6-217ENST00000575338 GAGE10A6NGK3 116 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 EMP1P54849 157 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 RPL24P83731 157 aaKnown RBP4.85□□□□□ -1.63
SMG6-217ENST00000575338 CIRBPQ14011 172 aaKnown RBP4.85□□□□□ -1.63
SMG6-217ENST00000575338 SFTA2Q6UW10 78 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 SHISA2Q6UWI4 295 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 SH2D6Q7Z4S9 175 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 MAPKAPK5-AS1Q8N8E1 139 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 NHP2Q9NX24 153 aaKnown RBP4.85□□□□□ -1.63
SMG6-217ENST00000575338 PRO0255Q9UI72 69 aa4.85□□□□□ -1.63
SMG6-217ENST00000575338 OTOGQ6ZRI0 2925 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 MTORP42345 2549 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 IGLV5-45A0A087WSX0 123 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.84□□□□□ -1.63
SMG6-217ENST00000575338 A0A0J9YY99 117 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 CCL25O15444 150 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 UBE2D1P51668 147 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 FXYD2P54710 66 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 FHL2Q14192 279 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 Q6ZUT4 128 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 OPRPNQ99935 248 aaPredicted RBP4.84□□□□□ -1.63
SMG6-217ENST00000575338 TTTY13Q9BZ97 58 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 HIVEP1P15822 2718 aa4.84□□□□□ -1.63
SMG6-217ENST00000575338 SETD2Q9BYW2 2564 aaPredicted RBP4.83□□□□□ -1.64
SMG6-217ENST00000575338 TRBV6-8A0A0A6YYG3 113 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 A0A1B0GWB2 263 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 A0A1W2PPM0 123 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 H3BUT2 72 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 TIMM17BO60830 172 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 SPART-AS1P0CW21 52 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 IGHV3-30-3P0DP02 117 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 DEFB130BP0DP73 79 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 DEFB130AP0DP74 79 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 C12orf74Q32Q52 190 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 SAMD5Q5TGI4 173 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 SBSPONQ8IVN8 264 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 C3orf56Q8N813 242 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 ATP6V0E2Q8NHE4 81 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 DEFB104AQ8WTQ1 72 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 RAB37Q96AX2 223 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 VSIG2Q96IQ7 327 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 CDC42SE2Q9NRR3 84 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 X6R8D5 127 aa4.83□□□□□ -1.64
SMG6-217ENST00000575338 NF1P21359 2839 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 TRAV26-1A0A087WT03 109 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 A0A0J9YXY3 114 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 A8MZ25 164 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 K7EP34 96 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 ATP5G1P05496 136 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 LINC00694P0DN24 101 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 IFITM1P13164 125 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 DAD1P61803 113 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 HERV-K104P63124 156 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 DEFB135Q30KP9 77 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 FAM222AQ5U5X8 452 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 ZFAND6Q6FIF0 208 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 RNF183Q96D59 192 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 NDUFA12Q9UI09 145 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 SPCS1Q9Y6A9 102 aa4.82□□□□□ -1.64
SMG6-217ENST00000575338 NSD1Q96L73 2696 aaPredicted RBP4.82□□□□□ -1.64
SMG6-217ENST00000575338 A0A1B0GUV1 79 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 NDUFA1O15239 70 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 PAX4O43316 350 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 IGHV3-30P01768 117 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 IGHV3-30-5P0DP03 117 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 GYPEP15421 78 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 CEMP1Q6PRD7 247 aaPredicted RBP4.81□□□□□ -1.64
SMG6-217ENST00000575338 NTM-AS1Q6ZSK4 140 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 CHCHD5Q9BSY4 110 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 SPANXDQ9BXN6 97 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 SPANXCQ9NY87 97 aa4.81□□□□□ -1.64
SMG6-217ENST00000575338 A0A0B4J2C4 111 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 IGLL5B9A064 214 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 IGHV4-30-4P0DP06 118 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 TSPEAR-AS2P59090 65 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 MRPL23Q16540 153 aaKnown RBP4.8□□□□□ -1.64
SMG6-217ENST00000575338 LINC00242Q5T6M2 205 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 PPDPFQ9H3Y8 114 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 Q9UF83 564 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 CDKN2A-AS1Q9UH64 79 aa4.8□□□□□ -1.64
SMG6-217ENST00000575338 CUBNO60494 3623 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 TRBV20-1A0A075B6N2 111 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 IGHV3-64A0A075B6Q5 118 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 TRAV13-1A0A0B4J241 112 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 IGHV4-28A0A0C4DH34 117 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 IGLV5-39A0A0G2JS06 123 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 SPINK8P0C7L1 97 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 EGFEM1PQ0D2K5 195 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 SS18Q15532 418 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 RNASE13Q5GAN3 156 aaKnown RBP4.79□□□□□ -1.64
SMG6-217ENST00000575338 LINC01561Q8N1V8 128 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 C10orf126Q8N4M7 172 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 FAM104AQ969W3 186 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 PRO1854Q9UHT4 67 aa4.79□□□□□ -1.64
SMG6-217ENST00000575338 FN1P02751 2386 aaKnown RBP4.79□□□□□ -1.64
SMG6-217ENST00000575338 TRAV8-3A0A0A6YYJ7 113 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms