RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 TRBV6-1A0A0K0K1D8 114 aa6.71□□□□□ -1.34
VPS39-205ENST00000562258 MYMXA0A1B0GTQ4 84 aa6.71□□□□□ -1.34
VPS39-205ENST00000562258 J3QR89 54 aa6.71□□□□□ -1.34
VPS39-205ENST00000562258 HIGD2BQ4VC39 106 aa6.71□□□□□ -1.34
VPS39-205ENST00000562258 RBMY1BA6NDE4 496 aaKnown RBP6.71□□□□□ -1.34
VPS39-205ENST00000562258 RBMY1EA6NEQ0 496 aaKnown RBP6.71□□□□□ -1.34
VPS39-205ENST00000562258 RBMY1DP0C7P1 496 aaKnown RBP6.71□□□□□ -1.34
VPS39-205ENST00000562258 ORAOV1Q8WV07 137 aa6.71□□□□□ -1.34
VPS39-205ENST00000562258 GTSF1LQ9H1H1 148 aa6.71□□□□□ -1.34
VPS39-205ENST00000562258 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.7□□□□□ -1.34
VPS39-205ENST00000562258 IGKV2-24A0A0C4DH68 120 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 KRTAP10-3P60369 221 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 NDUFA12Q9UI09 145 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 A0A1B0GV72 72 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 F8VRH5 84 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 COX7A2LO14548 114 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 MED14OSP0DP75 135 aa6.7□□□□□ -1.34
VPS39-205ENST00000562258 NUPR1O60356 82 aa6.69□□□□□ -1.34
VPS39-205ENST00000562258 RPL18AQ02543 176 aaKnown RBP6.69□□□□□ -1.34
VPS39-205ENST00000562258 LYRM7Q5U5X0 104 aa6.69□□□□□ -1.34
VPS39-205ENST00000562258 GAGE10A6NGK3 116 aa6.69□□□□□ -1.34
VPS39-205ENST00000562258 ESDP10768 282 aa6.69□□□□□ -1.34
VPS39-205ENST00000562258 GAGE2BQ13066 116 aa6.69□□□□□ -1.34
VPS39-205ENST00000562258 NEXN-AS1Q8NBZ9 246 aa6.69□□□□□ -1.34
VPS39-205ENST00000562258 SMG1Q96Q15 3661 aaKnown RBP6.69□□□□□ -1.34
VPS39-205ENST00000562258 SOCS3O14543 225 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 SIVA1O15304 175 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 HERVK_113P63121 156 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 UBE2BP63146 152 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 GAS8-AS1O95177 125 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 BEAN1Q3B7T3 259 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 LINC00526Q96FQ7 95 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 NKAPP1Q8N9T2 125 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 C20orf203Q8NBC4 194 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 TM2D2Q9BX73 214 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 K7ERU9 68 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 M0QY20 66 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 RBMY1A1P0DJD3 496 aaKnown RBP6.68□□□□□ -1.34
VPS39-205ENST00000562258 RBMY1CP0DJD4 496 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 Q6ZUT4 128 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 LINC00467Q9BRT7 94 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 SPANXA1Q9NS26 97 aa6.68□□□□□ -1.34
VPS39-205ENST00000562258 TMEM238C9JI98 176 aa6.67□□□□□ -1.34
VPS39-205ENST00000562258 Q9H8V8 135 aa6.67□□□□□ -1.34
VPS39-205ENST00000562258 TRBV6-4A0A1B0GX49 114 aa6.67□□□□□ -1.34
VPS39-205ENST00000562258 REG3AQ06141 175 aa6.67□□□□□ -1.34
VPS39-205ENST00000562258 TDRG1Q3Y452 100 aa6.67□□□□□ -1.34
VPS39-205ENST00000562258 GAGE12HA6NDE8 117 aa6.67□□□□□ -1.34
VPS39-205ENST00000562258 WFDC9Q8NEX5 89 aa6.66□□□□□ -1.34
VPS39-205ENST00000562258 MRPS16Q9Y3D3 137 aaKnown RBP6.66□□□□□ -1.34
VPS39-205ENST00000562258 HRNRQ86YZ3 2850 aaPredicted RBP6.66□□□□□ -1.34
VPS39-205ENST00000562258 TRBV6-8A0A0A6YYG3 113 aa6.66□□□□□ -1.34
VPS39-205ENST00000562258 SLC25A20O43772 301 aa6.66□□□□□ -1.34
VPS39-205ENST00000562258 RS1O15537 224 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 RBX1P62877 108 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 SPAG11BQ08648 103 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 J3QQQ9 107 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 BOD1L2Q8IYS8 172 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 TTTY13Q9BZ97 58 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 CELA1Q9UNI1 258 aa6.65□□□□□ -1.34
VPS39-205ENST00000562258 TRAV8-3A0A0A6YYJ7 113 aa6.65□□□□□ -1.35
VPS39-205ENST00000562258 SPATA3Q8NHX4 192 aa6.65□□□□□ -1.35
VPS39-205ENST00000562258 RNASE8Q8TDE3 154 aaKnown RBP6.65□□□□□ -1.35
VPS39-205ENST00000562258 FABP2P12104 132 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 A0A1B0GXF2 115 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 H3BUT2 72 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 RBMY1FQ15415 496 aaKnown RBP6.64□□□□□ -1.35
VPS39-205ENST00000562258 C10orf126Q8N4M7 172 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 DAND5Q8N907 189 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 C15orf53Q8NAA6 179 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 C9orf85Q96MD7 179 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 MPV17L2Q567V2 206 aa6.64□□□□□ -1.35
VPS39-205ENST00000562258 LEPROTO15243 131 aa6.63□□□□□ -1.35
VPS39-205ENST00000562258 CHCHD10Q8WYQ3 142 aaPredicted RBP6.63□□□□□ -1.35
VPS39-205ENST00000562258 CRYBA4P53673 196 aa6.62□□□□□ -1.35
VPS39-205ENST00000562258 OVOL2Q9BRP0 275 aa6.62□□□□□ -1.35
VPS39-205ENST00000562258 IGHV4-4A0A075B6R2 117 aa6.62□□□□□ -1.35
VPS39-205ENST00000562258 SNHG12Q9BXW3 62 aa6.62□□□□□ -1.35
VPS39-205ENST00000562258 NUPR2A6NF83 97 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 K7EIL1 84 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 KRTAP10-11P60412 298 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 Q6ZVH6 145 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 C11orf86A6NJI1 115 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 K7EMI3 77 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 LGALS9CQ6DKI2 356 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 BAALCQ8WXS3 180 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 RNF185Q96GF1 192 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 PCP2Q8IVA1 136 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 ERG28Q9UKR5 140 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 NDUFA1O15239 70 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 NHLRC4P0CG21 123 aaPredicted RBP6.61□□□□□ -1.35
VPS39-205ENST00000562258 CDKN2A-AS1Q9UH64 79 aa6.61□□□□□ -1.35
VPS39-205ENST00000562258 DLEU1O43261 78 aa6.6□□□□□ -1.35
VPS39-205ENST00000562258 FHL2Q14192 279 aa6.6□□□□□ -1.35
VPS39-205ENST00000562258 Q6ZSN1 163 aa6.6□□□□□ -1.35
VPS39-205ENST00000562258 C12orf74Q32Q52 190 aa6.59□□□□□ -1.35
VPS39-205ENST00000562258 TTC32Q5I0X7 151 aa6.59□□□□□ -1.35
VPS39-205ENST00000562258 LELP1Q5T871 98 aa6.59□□□□□ -1.35
VPS39-205ENST00000562258 LRCOL1A6NCL2 159 aa6.58□□□□□ -1.36
VPS39-205ENST00000562258 PRSS47A8MTI9 375 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 116.5 ms