RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 SMIM17P0DL12 118 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 FAM236CP0DP71 79 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 ZFP2Q6ZN57 461 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 TSKUQ8WUA8 353 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 BORCS7Q96B45 105 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 PRADC1Q9BSG0 188 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 GFRA4Q9GZZ7 299 aa3.53□□□□□ -1.84
CLIP1-217ENST00000543205 SMIM26A0A096LP01 95 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 NTF3P20783 257 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 TWIST1Q15672 202 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 C14orf178Q8N769 122 aaPredicted RBP3.52□□□□□ -1.85
CLIP1-217ENST00000543205 GTSF1Q8WW33 167 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 VSIG2Q96IQ7 327 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 AP1S3Q96PC3 154 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 GNB1LQ9BYB4 327 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 SAMD10Q9BYL1 202 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 ICOSQ9Y6W8 199 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 V9GYV3 84 aa3.52□□□□□ -1.85
CLIP1-217ENST00000543205 TRBV6-4A0A1B0GX49 114 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 HIGD1CA8MV81 97 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 NDUFS5O43920 106 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 LY6G6CO95867 125 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 MT-ND4LP03901 98 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 TRGC1P0CF51 173 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 P0DMU3 169 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 FAM231AP0DMU4 169 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 FAM231CP0DMU5 169 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 SRIP30626 198 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 FOXA3P55318 350 aaPredicted RBP3.51□□□□□ -1.85
CLIP1-217ENST00000543205 RHOHQ15669 191 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 ZNF56Q15929 161 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 NFE4Q86UQ8 179 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 UBE2DNLQ8IWF7 75 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 SLC25A29Q8N8R3 303 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 OR13C6PQ8NH95 151 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 HIST1H4GQ99525 98 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 SEC11CQ9BY50 192 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 RBM12B-AS1Q9P1G2 102 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 NAT8BQ9UHF3 227 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 DNAH7Q8WXX0 4024 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 DYNC2H1Q8NCM8 4307 aaKnown RBP3.51□□□□□ -1.85
CLIP1-217ENST00000543205 MUC4Q99102 2169 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 A0A0J9YXV3 536 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 A0A1B0GUT8 65 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 MGPP08493 103 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 ADCYAP1P18509 176 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 CCL18P55774 89 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 PMAIP1Q13794 54 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 RNF212Q495C1 297 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 LGALS9CQ6DKI2 356 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 CNFNQ9BYD5 112 aa3.51□□□□□ -1.85
CLIP1-217ENST00000543205 A0A096LPF7 62 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 IGHV3OR16-9A0A0B4J2B5 98 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 LCE6AA0A183 80 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 SMIM27A0A1W2PRY6 76 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 EVI2AP22794 236 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 JOSD1Q15040 202 aaPredicted RBP3.5□□□□□ -1.85
CLIP1-217ENST00000543205 PMVKQ15126 192 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 SH2D6Q7Z4S9 175 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 LINC00337Q8N6G1 96 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 NUP35Q8NFH5 326 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 DPH3P1Q9H4G8 78 aa3.5□□□□□ -1.85
CLIP1-217ENST00000543205 KIAA0087Q14695 138 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 KIF25-AS1Q9Y6Z4 181 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 TRBV10-1A0A0K0K1A3 114 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 RPL36AP83881 106 aaKnown RBP3.49□□□□□ -1.85
CLIP1-217ENST00000543205 ESRGQ1W209 222 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 C10orf91Q5T1B1 145 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 LYPD5Q6UWN5 251 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 TEX43Q6ZNM6 134 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 ATP6V0E2Q8NHE4 81 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 PYGO1Q9Y3Y4 419 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 LINC00588Q9Y4M8 146 aa3.49□□□□□ -1.85
CLIP1-217ENST00000543205 HYDINQ4G0P3 5121 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 A0A0U1RQV1 116 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 APOC3P02656 99 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 S100A8P05109 93 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 FGF6P10767 208 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 LINC00315P59091 139 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 C6orf99Q4VX62 202 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 ZNRF2Q8NHG8 242 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 C2orf88Q9BSF0 95 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 OCR1Q9BZK8 76 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 TMEM191AQ9H0A3 160 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 RPS10P5Q9NQ39 176 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 CSMD3Q7Z407 3707 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 STARD9Q9P2P6 4700 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 TRBV7-3A0A075B6L6 115 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 C7orf77A4D0Y5 90 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 SMIM1B2RUZ4 78 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 K7EP13 123 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 M0QY20 66 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 S100PP25815 95 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 CKS1BP61024 79 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 HBBP68871 147 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 RHEBQ15382 184 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 MRPL54Q6P161 138 aaKnown RBP3.48□□□□□ -1.85
CLIP1-217ENST00000543205 RASL11AQ6T310 242 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 SVBPQ8N300 66 aa3.48□□□□□ -1.85
CLIP1-217ENST00000543205 IMMP2LQ96T52 175 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms