RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 OPRPNQ99935 248 aaPredicted RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 NOP10Q9NPE3 64 aaKnown RBP4.76□□□□□ -1.65
USP28-206ENST00000538224 AKAP9Q99996 3911 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 WNK1Q9H4A3 2382 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 BAHCC1Q9P281 2608 aa4.76□□□□□ -1.65
USP28-206ENST00000538224 NF1P21359 2839 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 IGLV5-45A0A087WSX0 123 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 TRGV4A0A0C4DH28 118 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 TIMM17BO60830 172 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 IGHV3-30P01768 117 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 PRM2P04554 102 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 GIG44P09565 113 aaPredicted RBP4.75□□□□□ -1.65
USP28-206ENST00000538224 IGHV3-30-3P0DP02 117 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 IGHV3-30-5P0DP03 117 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 HIST2H2BDQ6DRA6 164 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 KIR2DL5BQ8NHK3 375 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 COPS9Q8WXC6 57 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 VSIG2Q96IQ7 327 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 TMEM243Q9BU79 118 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 KRTAP3-3Q9BYR6 98 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 KRTAP3-2Q9BYR7 98 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 HIVEP2P31629 2446 aa4.75□□□□□ -1.65
USP28-206ENST00000538224 SETXQ7Z333 2677 aaKnown RBP4.75□□□□□ -1.65
USP28-206ENST00000538224 ZNF469Q96JG9 3925 aaPredicted RBP4.75□□□□□ -1.65
USP28-206ENST00000538224 A0A0B4J2C4 111 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 IGHV3-38A0A0C4DH36 116 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 PLAC8L1A1L4L8 177 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 F8W1H4 67 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 ZFAND6Q6FIF0 208 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 FAM104AQ969W3 186 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 NAA38Q9BRA0 125 aaKnown RBP4.74□□□□□ -1.65
USP28-206ENST00000538224 SPANXDQ9BXN6 97 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 SPANXCQ9NY87 97 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 NDUFA12Q9UI09 145 aa4.74□□□□□ -1.65
USP28-206ENST00000538224 TRBV20-1A0A075B6N2 111 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 A0A0J9YXY3 114 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE12JA6NER3 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 J3QR89 54 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 NDUFA1O15239 70 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE7O76087 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE12FP0CL80 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE12GP0CL81 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE12IP0CL82 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 IFITM1P13164 125 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 APOC4P55056 127 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE4Q13068 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE5Q13069 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 CIRBPQ14011 172 aaKnown RBP4.73□□□□□ -1.65
USP28-206ENST00000538224 GAGE13Q4V321 117 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 CEMP1Q6PRD7 247 aaPredicted RBP4.73□□□□□ -1.65
USP28-206ENST00000538224 SBSPONQ8IVN8 264 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 C10orf126Q8N4M7 172 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 LINC00612Q8N6U2 182 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 RNF183Q96D59 192 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 SMR3AQ99954 134 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 SPATA25Q9BR10 227 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 WFDC10AQ9H1F0 79 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 PRO1854Q9UHT4 67 aa4.73□□□□□ -1.65
USP28-206ENST00000538224 NBPF19A0A087WUL8 3843 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 FASNP49327 2511 aaKnown RBP4.72□□□□□ -1.65
USP28-206ENST00000538224 LYRM9A8MSI8 78 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 INAFM1C9JVW0 142 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 WIPF1O43516 503 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 CRLF1O75462 422 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 APOMO95445 188 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 KRTAP10-3P60369 221 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 MIAQ16674 131 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 Q9UF83 564 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 MTORP42345 2549 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 ACANP16112 2415 aa4.72□□□□□ -1.65
USP28-206ENST00000538224 IGHV3-64A0A075B6Q5 118 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 IGLV5-39A0A0G2JS06 123 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 SPINK8P0C7L1 97 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 CFC1BP0CG36 223 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 CFC1P0CG37 223 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 LINC00694P0DN24 101 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 HERV-K104P63124 156 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 RNASE13Q5GAN3 156 aaKnown RBP4.71□□□□□ -1.66
USP28-206ENST00000538224 SFTA2Q6UW10 78 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 CITED1Q99966 193 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 PPDPFQ9H3Y8 114 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 CDC42SE2Q9NRR3 84 aa4.71□□□□□ -1.66
USP28-206ENST00000538224 NSD1Q96L73 2696 aaPredicted RBP4.71□□□□□ -1.66
USP28-206ENST00000538224 TRBV6-8A0A0A6YYG3 113 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 TRAV8-3A0A0A6YYJ7 113 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 LOC107984156A0A0G2JMH3 177 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 A4D1N5 150 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 FHL2Q14192 279 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 LINC00242Q5T6M2 205 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 NTM-AS1Q6ZSK4 140 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 ARL17AQ8IVW1 177 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 ATP6V0E2Q8NHE4 81 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 CDKN2A-AS1Q9UH64 79 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 ERG28Q9UKR5 140 aa4.7□□□□□ -1.66
USP28-206ENST00000538224 TEX48A0A1B0GUV7 120 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 GAGE12HA6NDE8 117 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 SMIM1B2RUZ4 78 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 H3BMG7 143 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 GAGE6Q13070 117 aa4.69□□□□□ -1.66
USP28-206ENST00000538224 MUSTN1Q8IVN3 82 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms