RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 ERCC8Q13216 396 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 RBMY1FQ15415 496 aaKnown RBP4.02□□□□□ -1.77
NUP54-218ENST00000515460 CEMP1Q6PRD7 247 aaPredicted RBP4.02□□□□□ -1.77
NUP54-218ENST00000515460 LINC01006Q8NI28 216 aa4.02□□□□□ -1.77
NUP54-218ENST00000515460 SRSF12Q8WXF0 261 aaKnown RBP4.02□□□□□ -1.77
NUP54-218ENST00000515460 HSPG2P98160 4391 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 A0A096LNJ9 63 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 IGKV2D-26A0A0A0MRZ7 120 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 IGLV1-36A0A0B4J1U3 117 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 IGHV1-58A0A0C4DH39 117 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 INS-IGF2F8WCM5 200 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 NDUFC1O43677 76 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 TCRAP04437 139 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 DAZ2Q13117 558 aaKnown RBP4.01□□□□□ -1.77
NUP54-218ENST00000515460 ZNF497Q6ZNH5 498 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 DAZ4Q86SG3 579 aaKnown RBP4.01□□□□□ -1.77
NUP54-218ENST00000515460 SSMEM1Q8WWF3 244 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 VSIG2Q96IQ7 327 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 TMEM243Q9BU79 118 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 DAZ3Q9NR90 486 aaKnown RBP4.01□□□□□ -1.77
NUP54-218ENST00000515460 PRO1854Q9UHT4 67 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 U3KQK5 164 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 HMCN2Q8NDA2 5059 aa4.01□□□□□ -1.77
NUP54-218ENST00000515460 WI2-2373I1.2A0A1W2PRP0 233 aa4□□□□□ -1.77
NUP54-218ENST00000515460 IQCF6A8MYZ5 107 aa4□□□□□ -1.77
NUP54-218ENST00000515460 IGHV4-59P01825 116 aa4□□□□□ -1.77
NUP54-218ENST00000515460 IFI27P40305 119 aaPredicted RBP4□□□□□ -1.77
NUP54-218ENST00000515460 KISS1Q15726 138 aa4□□□□□ -1.77
NUP54-218ENST00000515460 ORMDL2Q53FV1 153 aa4□□□□□ -1.77
NUP54-218ENST00000515460 KPRPQ5T749 579 aaPredicted RBP4□□□□□ -1.77
NUP54-218ENST00000515460 C2orf82Q6UX34 121 aa4□□□□□ -1.77
NUP54-218ENST00000515460 Q8N7P7 452 aa4□□□□□ -1.77
NUP54-218ENST00000515460 DAND5Q8N907 189 aa4□□□□□ -1.77
NUP54-218ENST00000515460 MUC7Q8TAX7 377 aa4□□□□□ -1.77
NUP54-218ENST00000515460 ZNF355PQ9NSJ1 428 aa4□□□□□ -1.77
NUP54-218ENST00000515460 CTSZQ9UBR2 303 aa4□□□□□ -1.77
NUP54-218ENST00000515460 ALMS1Q8TCU4 4167 aa4□□□□□ -1.77
NUP54-218ENST00000515460 DYNC1H1Q14204 4646 aaKnown RBP4□□□□□ -1.77
NUP54-218ENST00000515460 PKHD1P08F94 4074 aa4□□□□□ -1.77
NUP54-218ENST00000515460 HUWE1Q7Z6Z7 4374 aaKnown RBP4□□□□□ -1.77
NUP54-218ENST00000515460 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.99□□□□□ -1.77
NUP54-218ENST00000515460 IGHV1-69DA0A0B4J2H0 117 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 TEX49A0A1B0GTD5 131 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 LYRM9A8MSI8 78 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 NDUFB3O43676 98 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 IGHV1-69P01742 117 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 CFC1BP0CG36 223 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 CFC1P0CG37 223 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 LGALS3P17931 250 aaKnown RBP3.99□□□□□ -1.77
NUP54-218ENST00000515460 DUTP33316 252 aaKnown RBP3.99□□□□□ -1.77
NUP54-218ENST00000515460 UBE2E1P51965 193 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 Q6JHZ5 121 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 ZNF818PQ6ZRF7 136 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 FP248Q71RG6 208 aaPredicted RBP3.99□□□□□ -1.77
NUP54-218ENST00000515460 Q8N8P6 123 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 UBE2E2Q96LR5 201 aa3.99□□□□□ -1.77
NUP54-218ENST00000515460 ARHGAP32A7KAX9 2087 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 TRAV12-1A0A0B4J245 112 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 A0A0G2JRQ6 117 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 TRBV30A0A0K0K1B3 111 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 A0A1B0GUT8 65 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 SRRM4A7MD48 611 aaKnown RBP3.98□□□□□ -1.77
NUP54-218ENST00000515460 NDUFS5O43920 106 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 LHBP01229 141 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 INAFM2P0DMQ5 153 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 SAA4P35542 130 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 APOC4P55056 127 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 EDDM3BP56851 147 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 ZNF826PQ6ZT77 177 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 KTN1-AS1Q86SY8 53 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 ORMDL3Q8N138 153 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 LY6G5BQ8NDX9 201 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 NABP2Q9BQ15 211 aa3.98□□□□□ -1.77
NUP54-218ENST00000515460 TRBV7-1A0A0A6YYK4 115 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 IGKV1-5P01602 117 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 COX6CP09669 75 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 RBMY1A1P0DJD3 496 aaKnown RBP3.97□□□□□ -1.77
NUP54-218ENST00000515460 SUB1P53999 127 aaKnown RBP eCLIP3.97□□□□□ -1.77
NUP54-218ENST00000515460 SNRPD3P62318 126 aaKnown RBP3.97□□□□□ -1.77
NUP54-218ENST00000515460 PRB3Q04118 309 aaPredicted RBP3.97□□□□□ -1.77
NUP54-218ENST00000515460 SCGB1D4Q6XE38 83 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 VMO1Q7Z5L0 202 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 ZNF799Q96GE5 643 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 CCL13Q99616 98 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 ZNRD1Q9P1U0 126 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 KAAG1Q9UBP8 84 aa3.97□□□□□ -1.77
NUP54-218ENST00000515460 TIMM8BQ9Y5J9 83 aaPredicted RBP3.97□□□□□ -1.77
NUP54-218ENST00000515460 TRBV6-6A0A0A6YYG2 114 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 TRAV3A0A0B4J244 114 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 TRAV41A0A0B4J266 112 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 TRBV6-1A0A0K0K1D8 114 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 M0R135 149 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 TIMM17BO60830 172 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 IGLV3-1P01715 115 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 IGHV3-33P01772 117 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 P0C879 139 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 RBMY1CP0DJD4 496 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 RPS27P42677 84 aaKnown RBP3.96□□□□□ -1.78
NUP54-218ENST00000515460 ZNF138P52744 262 aa3.96□□□□□ -1.78
NUP54-218ENST00000515460 ATP5EP2Q5VTU8 51 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms