RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 TRGV3P03979 118 aa6.96□□□□□ -1.3
USP53-207ENST00000510852 UBE2L3P68036 154 aaKnown RBP6.96□□□□□ -1.3
USP53-207ENST00000510852 TWIST1Q15672 202 aa6.96□□□□□ -1.3
USP53-207ENST00000510852 CFAP126Q5VTH2 177 aa6.96□□□□□ -1.3
USP53-207ENST00000510852 S4R3C0 116 aa6.96□□□□□ -1.3
USP53-207ENST00000510852 C15orf32Q32M92 178 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 LINC01006Q8NI28 216 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 SLC25A22Q9H936 323 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 JMJD1CQ15652 2540 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 FAM223BA6NKX1 122 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 K7EQG2 157 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 ZNF324O75467 553 aaPredicted RBP6.95□□□□□ -1.3
USP53-207ENST00000510852 PRM2P04554 102 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 S100A4P26447 101 aaKnown RBP6.95□□□□□ -1.3
USP53-207ENST00000510852 TREML4Q6UXN2 200 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 FAM223AQ8IWN6 122 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 KRTAP3-3Q9BYR6 98 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 KRTAP3-2Q9BYR7 98 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 SND1-IT1Q9HBX3 110 aa6.95□□□□□ -1.3
USP53-207ENST00000510852 IGHV3-23P01764 117 aa6.94□□□□□ -1.3
USP53-207ENST00000510852 SMIM13P0DJ93 91 aa6.94□□□□□ -1.3
USP53-207ENST00000510852 MDKP21741 143 aaPredicted RBP6.94□□□□□ -1.3
USP53-207ENST00000510852 TMEM136Q6ZRR5 245 aa6.94□□□□□ -1.3
USP53-207ENST00000510852 C2CD3Q4AC94 2353 aa6.94□□□□□ -1.3
USP53-207ENST00000510852 IGKV1OR2-108A0A075B7D4 117 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 C9JCJ5 164 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 USMG5Q96IX5 58 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 ODF3Q96PU9 254 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 MGST2Q99735 147 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 MANBALQ9NQG1 85 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 HIGD1BQ9P298 99 aa6.93□□□□□ -1.3
USP53-207ENST00000510852 IGKV1D-37A0A075B6S9 117 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 TRAV2A0A0B4J234 112 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 IGHV3-38A0A0C4DH36 116 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 CLPSL1A2RUU4 121 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 ADAMTSL4-AS1Q5T5F5 129 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 TSKUQ8WUA8 353 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 SETD2Q9BYW2 2564 aaPredicted RBP6.92□□□□□ -1.3
USP53-207ENST00000510852 IGLV5-45A0A087WSX0 123 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 TRBV7-1A0A0A6YYK4 115 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 IGHV3-11P01762 117 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 C18orf65Q6ZTR6 163 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 SCXQ7RTU7 201 aa6.92□□□□□ -1.3
USP53-207ENST00000510852 CCL20P78556 96 aa6.91□□□□□ -1.3
USP53-207ENST00000510852 CXCL6P80162 114 aa6.91□□□□□ -1.3
USP53-207ENST00000510852 IGKV1-17P01599 117 aa6.91□□□□□ -1.3
USP53-207ENST00000510852 PROK1P58294 105 aa6.91□□□□□ -1.3
USP53-207ENST00000510852 Q8N8P6 123 aa6.91□□□□□ -1.3
USP53-207ENST00000510852 TRGV9Q99603 122 aa6.91□□□□□ -1.3
USP53-207ENST00000510852 TCRBV4S1A1TA0A5B7 111 aa6.9□□□□□ -1.3
USP53-207ENST00000510852 CTSGP08311 255 aa6.9□□□□□ -1.3
USP53-207ENST00000510852 C3orf79P0CE67 100 aa6.9□□□□□ -1.3
USP53-207ENST00000510852 CYP2G1PQ6ZSU1 146 aa6.9□□□□□ -1.3
USP53-207ENST00000510852 SCRT2Q9NQ03 307 aa6.9□□□□□ -1.3
USP53-207ENST00000510852 TIMM9Q9Y5J7 89 aa6.9□□□□□ -1.3
USP53-207ENST00000510852 CD28P10747 220 aa6.9□□□□□ -1.31
USP53-207ENST00000510852 FUSP35637 526 aaKnown RBP eCLIP6.9□□□□□ -1.31
USP53-207ENST00000510852 SMCPP49901 116 aaPredicted RBP6.9□□□□□ -1.31
USP53-207ENST00000510852 CIRBPQ14011 172 aaKnown RBP6.9□□□□□ -1.31
USP53-207ENST00000510852 C2orf91Q6ZV80 131 aa6.9□□□□□ -1.31
USP53-207ENST00000510852 DAND5Q8N907 189 aa6.9□□□□□ -1.31
USP53-207ENST00000510852 NXT2Q9NPJ8 142 aaKnown RBP6.9□□□□□ -1.31
USP53-207ENST00000510852 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.89□□□□□ -1.31
USP53-207ENST00000510852 HSPB1P04792 205 aaKnown RBP6.89□□□□□ -1.31
USP53-207ENST00000510852 UBE2G1P62253 170 aa6.89□□□□□ -1.31
USP53-207ENST00000510852 SOSTDC1Q6X4U4 206 aa6.89□□□□□ -1.31
USP53-207ENST00000510852 LINC00310P59036 64 aa6.89□□□□□ -1.31
USP53-207ENST00000510852 HERVK_113P61574 105 aa6.89□□□□□ -1.31
USP53-207ENST00000510852 C5orf38Q86SI9 138 aa6.89□□□□□ -1.31
USP53-207ENST00000510852 IGHV3-35A0A0C4DH35 117 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 SERF2P84101 59 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 RBM3P98179 157 aaKnown RBP6.88□□□□□ -1.31
USP53-207ENST00000510852 ATRQ13535 2644 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 CEMP1Q6PRD7 247 aaPredicted RBP6.88□□□□□ -1.31
USP53-207ENST00000510852 NRACQ8N912 160 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 SLC25A2Q9BXI2 301 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 KRTAP10-3P60369 221 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 KRTAP24-1Q3LI83 254 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 SERP2Q8N6R1 65 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 CYB561D1Q8N8Q1 229 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 ZNF414Q96IQ9 312 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 LINC00474Q9P2X8 69 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 CELA1Q9UNI1 258 aa6.88□□□□□ -1.31
USP53-207ENST00000510852 BMPR1BO00238 502 aa6.87□□□□□ -1.31
USP53-207ENST00000510852 SERF1AO75920 110 aa6.87□□□□□ -1.31
USP53-207ENST00000510852 C4orf3Q8WVX3 66 aa6.87□□□□□ -1.31
USP53-207ENST00000510852 FBN1P35555 2871 aaKnown RBP6.87□□□□□ -1.31
USP53-207ENST00000510852 KLHL30-AS1Q8NEE0 82 aa6.87□□□□□ -1.31
USP53-207ENST00000510852 TP53TG3Q9ULZ0 132 aa6.87□□□□□ -1.31
USP53-207ENST00000510852 IL4P05112 153 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 CCKP06307 115 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 LYZP61626 148 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 HIST1H4AP62805 103 aaKnown RBP6.86□□□□□ -1.31
USP53-207ENST00000510852 DEFB136Q30KP8 78 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 IGHV4OR15-8A0A075B7B6 117 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 IGHV3OR16-8A0A075B7F1 116 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 A0A087WW49 117 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 UBE2AP49459 152 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 PATE2Q6UY27 113 aa6.86□□□□□ -1.31
USP53-207ENST00000510852 IGLV5-52A0A0A0MRZ9 124 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms