RNA–Protein interactions for RNA: ENST00000505676.5

TRAPPC11-204, Transcript of trafficking protein particle complex 11, humanhuman

TSL 1 (best)

Gene TRAPPC11, Length 2,244 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC11-204ENST00000505676 SRSF9Q13242 221 aaKnown RBP eCLIP12.26□□□□□ -0.45
TRAPPC11-204ENST00000505676 X6R8D5 127 aa12.26□□□□□ -0.45
TRAPPC11-204ENST00000505676 IGHV1-58A0A0C4DH39 117 aa12.26□□□□□ -0.45
TRAPPC11-204ENST00000505676 HERVK_113P63121 156 aa12.26□□□□□ -0.45
TRAPPC11-204ENST00000505676 FN1P02751 2386 aaKnown RBP12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 SETXQ7Z333 2677 aaKnown RBP12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 UBE2L6O14933 153 aa12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 LINC00694P0DN24 101 aa12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 CEMP1Q6PRD7 247 aaPredicted RBP12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 TMEM101Q96IK0 257 aa12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 NHP2Q9NX24 153 aaKnown RBP12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 CCL25O15444 150 aa12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 TSPEAR-AS2P59090 65 aa12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 AMMECR1LQ6DCA0 310 aa12.25□□□□□ -0.45
TRAPPC11-204ENST00000505676 NOTCH2Q04721 2471 aa12.24□□□□□ -0.45
TRAPPC11-204ENST00000505676 C2CD3Q4AC94 2353 aa12.24□□□□□ -0.45
TRAPPC11-204ENST00000505676 NTM-AS1Q6ZSK4 140 aa12.24□□□□□ -0.45
TRAPPC11-204ENST00000505676 NSD1Q96L73 2696 aaPredicted RBP12.24□□□□□ -0.45
TRAPPC11-204ENST00000505676 A0A1W2PPM0 123 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 H3BUT2 72 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 FABP2P12104 132 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 C12orf74Q32Q52 190 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 GAGE10A6NGK3 116 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 TMEM238C9JI98 176 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 IGHV3-30-3P0DP02 117 aa12.23□□□□□ -0.45
TRAPPC11-204ENST00000505676 SAMD5Q5TGI4 173 aa12.22□□□□□ -0.45
TRAPPC11-204ENST00000505676 MIFP14174 115 aa12.22□□□□□ -0.45
TRAPPC11-204ENST00000505676 VSIG2Q96IQ7 327 aa12.22□□□□□ -0.45
TRAPPC11-204ENST00000505676 CUBNO60494 3623 aa12.21□□□□□ -0.45
TRAPPC11-204ENST00000505676 K7EP34 96 aa12.21□□□□□ -0.45
TRAPPC11-204ENST00000505676 RAB37Q96AX2 223 aa12.21□□□□□ -0.45
TRAPPC11-204ENST00000505676 CDC42SE2Q9NRR3 84 aa12.21□□□□□ -0.45
TRAPPC11-204ENST00000505676 SETD2Q9BYW2 2564 aaPredicted RBP12.2□□□□□ -0.46
TRAPPC11-204ENST00000505676 PRO0255Q9UI72 69 aa12.2□□□□□ -0.46
TRAPPC11-204ENST00000505676 TRBV6-8A0A0A6YYG3 113 aa12.19□□□□□ -0.46
TRAPPC11-204ENST00000505676 SPATA3Q8NHX4 192 aa12.19□□□□□ -0.46
TRAPPC11-204ENST00000505676 K7EP13 123 aa12.19□□□□□ -0.46
TRAPPC11-204ENST00000505676 DEFB130BP0DP73 79 aa12.19□□□□□ -0.46
TRAPPC11-204ENST00000505676 DEFB130AP0DP74 79 aa12.19□□□□□ -0.46
TRAPPC11-204ENST00000505676 RNASE13Q5GAN3 156 aaKnown RBP12.19□□□□□ -0.46
TRAPPC11-204ENST00000505676 IGHV3-30P01768 117 aa12.18□□□□□ -0.46
TRAPPC11-204ENST00000505676 IGHV3-30-5P0DP03 117 aa12.18□□□□□ -0.46
TRAPPC11-204ENST00000505676 ZFAND6Q6FIF0 208 aa12.18□□□□□ -0.46
TRAPPC11-204ENST00000505676 TEX48A0A1B0GUV7 120 aa12.18□□□□□ -0.46
TRAPPC11-204ENST00000505676 IGLL5B9A064 214 aa12.17□□□□□ -0.46
TRAPPC11-204ENST00000505676 TIMM17BO60830 172 aa12.17□□□□□ -0.46
TRAPPC11-204ENST00000505676 SPCS1Q9Y6A9 102 aa12.17□□□□□ -0.46
TRAPPC11-204ENST00000505676 RPL24P83731 157 aaKnown RBP12.17□□□□□ -0.46
TRAPPC11-204ENST00000505676 LINC00242Q5T6M2 205 aa12.17□□□□□ -0.46
TRAPPC11-204ENST00000505676 NDUFA12Q9UI09 145 aa12.17□□□□□ -0.46
TRAPPC11-204ENST00000505676 A0A0J9YXY3 114 aa12.16□□□□□ -0.46
TRAPPC11-204ENST00000505676 K7ERJ3 54 aa12.16□□□□□ -0.46
TRAPPC11-204ENST00000505676 DEFB135Q30KP9 77 aa12.16□□□□□ -0.46
TRAPPC11-204ENST00000505676 FAM222AQ5U5X8 452 aa12.16□□□□□ -0.46
TRAPPC11-204ENST00000505676 IGLV5-39A0A0G2JS06 123 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 LOC100131303A0A0U1RQF7 123 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 LYRM7Q5U5X0 104 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 SHISA2Q6UWI4 295 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 ATP6V0E2Q8NHE4 81 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 RNF183Q96D59 192 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 CDKN2A-AS1Q9UH64 79 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 IGHV3-64A0A075B6Q5 118 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 C10orf126Q8N4M7 172 aa12.15□□□□□ -0.46
TRAPPC11-204ENST00000505676 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 SPANXDQ9BXN6 97 aa12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 SPANXCQ9NY87 97 aa12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 HIVEP1P15822 2718 aa12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 A8MZ25 164 aa12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 NDUFA1O15239 70 aa12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 SPINK8P0C7L1 97 aa12.14□□□□□ -0.47
TRAPPC11-204ENST00000505676 TRAV8-3A0A0A6YYJ7 113 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 IGHV4-28A0A0C4DH34 117 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 IGHV4-30-4P0DP06 118 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 GYPEP15421 78 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 TRAV26-1A0A087WT03 109 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 DAD1P61803 113 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 Q8NAQ8 132 aa12.13□□□□□ -0.47
TRAPPC11-204ENST00000505676 SPART-AS1P0CW21 52 aa12.12□□□□□ -0.47
TRAPPC11-204ENST00000505676 CHCHD5Q9BSY4 110 aa12.12□□□□□ -0.47
TRAPPC11-204ENST00000505676 PAX4O43316 350 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 SH2D6Q7Z4S9 175 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 COPS9Q8WXC6 57 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 JMJD1CQ15652 2540 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 TRAV13-1A0A0B4J241 112 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 A0A0B4J2C4 111 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 A0A1B0GUV1 79 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 ATP5G1P05496 136 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 IFITM1P13164 125 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 CIRBPQ14011 172 aaKnown RBP12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 KRTAP24-1Q3LI83 254 aa12.11□□□□□ -0.47
TRAPPC11-204ENST00000505676 HERV-K104P63124 156 aa12.1□□□□□ -0.47
TRAPPC11-204ENST00000505676 EGFEM1PQ0D2K5 195 aa12.1□□□□□ -0.47
TRAPPC11-204ENST00000505676 C3orf56Q8N813 242 aa12.1□□□□□ -0.47
TRAPPC11-204ENST00000505676 SMIM1B2RUZ4 78 aa12.09□□□□□ -0.47
TRAPPC11-204ENST00000505676 COX6A2Q02221 97 aa12.09□□□□□ -0.47
TRAPPC11-204ENST00000505676 GAGE6Q13070 117 aa12.09□□□□□ -0.47
TRAPPC11-204ENST00000505676 NAA38Q9BRA0 125 aaKnown RBP12.09□□□□□ -0.47
TRAPPC11-204ENST00000505676 PGPEP1Q9NXJ5 209 aa12.09□□□□□ -0.47
TRAPPC11-204ENST00000505676 MIAQ16674 131 aa12.09□□□□□ -0.47
TRAPPC11-204ENST00000505676 LITAFQ99732 161 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms