RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 TRAV8-4A0A0B4J246 113 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 HLA-DQA1P01909 254 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 PDE6HQ13956 83 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 LINC01545Q5VT33 79 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 Q6ZSV7 163 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 ZNF575Q86XF7 245 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 RPP21Q9H633 154 aaKnown RBP4.57□□□□□ -1.68
SSBP1-213ENST00000496622 RBM12B-AS1Q9P1G2 102 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 H3BVH4 76 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 NDUFA4O00483 81 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 NCR2O95944 276 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 ARMS2P0C7Q2 107 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 SCGB1C2P0DMR2 95 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 TMEM190Q8WZ59 177 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 KRTAP3-1Q9BYR8 98 aa4.57□□□□□ -1.68
SSBP1-213ENST00000496622 IGHV1-24A0A0C4DH33 117 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 SH2D1AO60880 128 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 HERVK_113P61574 105 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 SS18Q15532 418 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 ZNF56Q15929 161 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 PRR9Q5T870 116 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 SBSPONQ8IVN8 264 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 LYPD1Q8N2G4 141 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 NXT2Q9NPJ8 142 aaKnown RBP4.56□□□□□ -1.68
SSBP1-213ENST00000496622 MSRB1Q9NZV6 116 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 C11orf21Q9P2W6 132 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 TRAV12-2A0A075B6T6 113 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 ZNF138P52744 262 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 URB1-AS1Q96HZ7 61 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 KRTAP4-7Q9BYR0 210 aa4.56□□□□□ -1.68
SSBP1-213ENST00000496622 IGHV7-4-1A0A0J9YVY3 117 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 IZUMO1RA6ND01 250 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 ATP5G1P05496 136 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 FP248Q71RG6 208 aaPredicted RBP4.55□□□□□ -1.68
SSBP1-213ENST00000496622 CHAC1Q9BUX1 264 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 SPANXDQ9BXN6 97 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 TIMM8BQ9Y5J9 83 aaPredicted RBP4.55□□□□□ -1.68
SSBP1-213ENST00000496622 EPM2AB3EWF7 344 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 H3BT86 120 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 Q6ZRU5 148 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 KLHL30-AS1Q8NEE0 82 aa4.55□□□□□ -1.68
SSBP1-213ENST00000496622 KNCNA6PVL3 124 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 INAFM1C9JVW0 142 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 H3BUA1 57 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 GAS8-AS1O95177 125 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 LY6G6DO95868 133 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 PRM2P04554 102 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 CD28P10747 220 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 NSUN5P1Q3KNT7 163 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 LYZL1Q6UWQ5 148 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 IMUPQ9GZP8 106 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 IGKV3D-20A0A0C4DH25 116 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 SOCS3O14543 225 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 P0DMU3 169 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 FAM231AP0DMU4 169 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 FAM231CP0DMU5 169 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 NPC2P61916 151 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 PSMG4Q5JS54 123 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 LINC01006Q8NI28 216 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 DCANP1Q8TF63 244 aa4.54□□□□□ -1.68
SSBP1-213ENST00000496622 ZFP2Q6ZN57 461 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 SMIM26A0A096LP01 95 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 LOC107984156A0A0G2JMH3 177 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 VCYO14598 125 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 OR5AL1P0C617 328 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 FXYD7P58549 80 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 LGALS9BQ3B8N2 356 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 ARL17AQ8IVW1 177 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 DEFB104AQ8WTQ1 72 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 SLC50A1Q9BRV3 221 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 KRTAP9-3Q9BYQ3 159 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 ZNF492Q9P255 531 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 ZNF580Q9UK33 172 aa4.53□□□□□ -1.68
SSBP1-213ENST00000496622 A0A1B0GXF2 115 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 C8orf87E5RJ46 101 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 SMKR1H3BMG3 65 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 HTN1P15515 57 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 RNASE4P34096 147 aaKnown RBP4.52□□□□□ -1.69
SSBP1-213ENST00000496622 SNRPD3P62318 126 aaKnown RBP4.52□□□□□ -1.69
SSBP1-213ENST00000496622 HBBP68871 147 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 SFTA2Q6UW10 78 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 PRR15Q8IV56 129 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 MYOZ3Q8TDC0 251 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 SERP1Q9Y6X1 66 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 A0A1B0GUT8 65 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 PLAC8L1A1L4L8 177 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 GNRH2O43555 120 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 INAFM2P0DMQ5 153 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 CIRBPQ14011 172 aaKnown RBP4.52□□□□□ -1.69
SSBP1-213ENST00000496622 TMEM61Q8N0U2 210 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 Q8N2B8 174 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 UPK3BQ9BT76 320 aa4.52□□□□□ -1.69
SSBP1-213ENST00000496622 TWIST1Q15672 202 aa4.51□□□□□ -1.69
SSBP1-213ENST00000496622 ORMDL2Q53FV1 153 aa4.51□□□□□ -1.69
SSBP1-213ENST00000496622 ZFAND2AQ8N6M9 145 aa4.51□□□□□ -1.69
SSBP1-213ENST00000496622 OR8A1Q8NGG7 326 aa4.51□□□□□ -1.69
SSBP1-213ENST00000496622 NTN5Q8WTR8 489 aaPredicted RBP4.51□□□□□ -1.69
SSBP1-213ENST00000496622 CHCHD1Q96BP2 118 aaKnown RBP4.51□□□□□ -1.69
SSBP1-213ENST00000496622 LOC389332A0A1B0GUA5 103 aa4.51□□□□□ -1.69
SSBP1-213ENST00000496622 ATP5L2Q7Z4Y8 100 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms