RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 TRAV12-3A0A0B4J271 114 aa10.75□□□□□ -0.69
VPS9D1-201ENST00000389386 SAA4P35542 130 aa10.75□□□□□ -0.69
VPS9D1-201ENST00000389386 LMO4P61968 165 aa10.75□□□□□ -0.69
VPS9D1-201ENST00000389386 BEAN1Q3B7T3 259 aa10.75□□□□□ -0.69
VPS9D1-201ENST00000389386 PYGO1Q9Y3Y4 419 aa10.75□□□□□ -0.69
VPS9D1-201ENST00000389386 TIRAPP58753 221 aa10.75□□□□□ -0.69
VPS9D1-201ENST00000389386 GCN1Q92616 2671 aaKnown RBP10.74□□□□□ -0.69
VPS9D1-201ENST00000389386 BAALC-AS2P0C853 105 aa10.74□□□□□ -0.69
VPS9D1-201ENST00000389386 CD28P10747 220 aa10.74□□□□□ -0.69
VPS9D1-201ENST00000389386 UNQ9165/PRO28630Q6UXU0 137 aa10.74□□□□□ -0.69
VPS9D1-201ENST00000389386 MINOS1-NBL1R4GNA1 71 aa10.74□□□□□ -0.69
VPS9D1-201ENST00000389386 C9orf85Q96MD7 179 aa10.73□□□□□ -0.69
VPS9D1-201ENST00000389386 BRD3OSQ6XYD6 125 aa10.73□□□□□ -0.69
VPS9D1-201ENST00000389386 NAV2Q8IVL1 2488 aa10.73□□□□□ -0.69
VPS9D1-201ENST00000389386 TMEM258P61165 79 aa10.72□□□□□ -0.69
VPS9D1-201ENST00000389386 TINCRA0A1B0GVN0 87 aa10.72□□□□□ -0.69
VPS9D1-201ENST00000389386 OXTP01178 125 aa10.72□□□□□ -0.69
VPS9D1-201ENST00000389386 Q5XG85 94 aa10.72□□□□□ -0.69
VPS9D1-201ENST00000389386 APCP25054 2843 aa10.72□□□□□ -0.69
VPS9D1-201ENST00000389386 IGHV3-16A0A0C4DH30 117 aa10.71□□□□□ -0.69
VPS9D1-201ENST00000389386 RNASE13Q5GAN3 156 aaKnown RBP10.71□□□□□ -0.69
VPS9D1-201ENST00000389386 CCDC168Q8NDH2 2452 aa10.71□□□□□ -0.69
VPS9D1-201ENST00000389386 RPL18AQ02543 176 aaKnown RBP10.71□□□□□ -0.69
VPS9D1-201ENST00000389386 NACAE9PAV3 2078 aa10.71□□□□□ -0.7
VPS9D1-201ENST00000389386 HIST2H2BCQ6DN03 193 aa10.71□□□□□ -0.7
VPS9D1-201ENST00000389386 Q8N2B8 174 aa10.71□□□□□ -0.7
VPS9D1-201ENST00000389386 UPK3BQ9BT76 320 aa10.71□□□□□ -0.7
VPS9D1-201ENST00000389386 IGKV3-7A0A075B6H7 116 aa10.7□□□□□ -0.7
VPS9D1-201ENST00000389386 FAM222AQ5U5X8 452 aa10.7□□□□□ -0.7
VPS9D1-201ENST00000389386 LINC00308Q8TCZ7 52 aa10.7□□□□□ -0.7
VPS9D1-201ENST00000389386 CCL19Q99731 98 aa10.7□□□□□ -0.7
VPS9D1-201ENST00000389386 INAFM2P0DMQ5 153 aa10.7□□□□□ -0.7
VPS9D1-201ENST00000389386 IGHV4-61A0A0C4DH41 118 aa10.69□□□□□ -0.7
VPS9D1-201ENST00000389386 TRBV12-3P01733 135 aa10.69□□□□□ -0.7
VPS9D1-201ENST00000389386 TRAV13-1A0A0B4J241 112 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 J3QLI3 93 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 NDUFA1O15239 70 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 SERP2Q8N6R1 65 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 NDUFA4O00483 81 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 DSCR8Q96T75 97 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 ITPR2Q14571 2701 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 HECTD1Q9ULT8 2610 aa10.68□□□□□ -0.7
VPS9D1-201ENST00000389386 IGHG2P01859 326 aa10.67□□□□□ -0.7
VPS9D1-201ENST00000389386 FAM218AQ96MZ4 157 aa10.67□□□□□ -0.7
VPS9D1-201ENST00000389386 KRTAP10-9P60411 292 aa10.67□□□□□ -0.7
VPS9D1-201ENST00000389386 CIRBPQ14011 172 aaKnown RBP10.67□□□□□ -0.7
VPS9D1-201ENST00000389386 TLN2Q9Y4G6 2542 aa10.66□□□□□ -0.7
VPS9D1-201ENST00000389386 FAM223BA6NKX1 122 aa10.66□□□□□ -0.7
VPS9D1-201ENST00000389386 FAM223AQ8IWN6 122 aa10.66□□□□□ -0.7
VPS9D1-201ENST00000389386 LY6EQ16553 131 aa10.65□□□□□ -0.7
VPS9D1-201ENST00000389386 SOSTDC1Q6X4U4 206 aa10.65□□□□□ -0.7
VPS9D1-201ENST00000389386 IGHV4-30-2A0A087WSY4 118 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 IGHV4-38-2P0DP08 117 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 CDKN2A-AS1Q9UH64 79 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 C19orf54Q5BKX5 351 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 RHPN1-AS1Q9BWJ2 59 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 RS1O15537 224 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 PLA2G2AP14555 144 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 MALP21145 153 aa10.64□□□□□ -0.71
VPS9D1-201ENST00000389386 IGKV3D-7A0A0C4DH55 119 aa10.63□□□□□ -0.71
VPS9D1-201ENST00000389386 NOTCH2Q04721 2471 aa10.63□□□□□ -0.71
VPS9D1-201ENST00000389386 Q6JHZ5 121 aa10.63□□□□□ -0.71
VPS9D1-201ENST00000389386 C5orf56Q8N8D9 126 aa10.63□□□□□ -0.71
VPS9D1-201ENST00000389386 UBE2D4Q9Y2X8 147 aa10.63□□□□□ -0.71
VPS9D1-201ENST00000389386 ZNF469Q96JG9 3925 aaPredicted RBP10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 A0A0U1RRA0 63 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 PRIMA1Q86XR5 153 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 Q9HAA7 133 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 TRAV12-2A0A075B6T6 113 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 LINC01561Q8N1V8 128 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 Q9H8V8 135 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 PRO0628Q9UI54 55 aa10.62□□□□□ -0.71
VPS9D1-201ENST00000389386 J3QKU1 62 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 RNF152Q8N8N0 203 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 MAPK1IP1LQ8NDC0 245 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 ZNF625Q96I27 306 aaPredicted RBP10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 CHCHD7Q9BUK0 85 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 C1orf43Q9BWL3 253 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 TEX15Q9BXT5 2789 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 IGHV1OR15-1A0A075B7D0 117 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 IGLV5-45A0A087WSX0 123 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 A0A087WVE0 104 aa10.61□□□□□ -0.71
VPS9D1-201ENST00000389386 MXRA5Q9NR99 2828 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 CREBBPQ92793 2442 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 USP17L23D6RBM5 183 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 DNAL4O96015 105 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 ZNF415Q09FC8 603 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 C10orf105Q8TEF2 133 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 COPS9Q8WXC6 57 aa10.6□□□□□ -0.71
VPS9D1-201ENST00000389386 PROK1P58294 105 aa10.59□□□□□ -0.71
VPS9D1-201ENST00000389386 LINC00846Q9NV44 126 aa10.59□□□□□ -0.71
VPS9D1-201ENST00000389386 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.59□□□□□ -0.71
VPS9D1-201ENST00000389386 IGLV5-39A0A0G2JS06 123 aa10.59□□□□□ -0.71
VPS9D1-201ENST00000389386 IGKV2-29A2NJV5 120 aaPredicted RBP10.59□□□□□ -0.71
VPS9D1-201ENST00000389386 C9orf129Q5T035 196 aaKnown RBP10.59□□□□□ -0.71
VPS9D1-201ENST00000389386 IGHV3-73A0A0B4J1V6 119 aa10.58□□□□□ -0.72
VPS9D1-201ENST00000389386 AVPP01185 164 aa10.58□□□□□ -0.72
VPS9D1-201ENST00000389386 SYNJ2BPP57105 145 aa10.58□□□□□ -0.72
VPS9D1-201ENST00000389386 Q9UF83 564 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms