RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 C10orf25Q5T742 122 aa8.82□□□□□ -1
VPS13A-205ENST00000376636 TRAV7A0A075B6U4 112 aa8.81□□□□□ -1
VPS13A-205ENST00000376636 TTC28Q96AY4 2481 aa8.81□□□□□ -1
VPS13A-205ENST00000376636 CTSZQ9UBR2 303 aa8.81□□□□□ -1
VPS13A-205ENST00000376636 A0A1B0GXF2 115 aa8.81□□□□□ -1
VPS13A-205ENST00000376636 FAM30AQ9NZY2 134 aa8.81□□□□□ -1
VPS13A-205ENST00000376636 LRRK2Q5S007 2527 aa8.8□□□□□ -1
VPS13A-205ENST00000376636 SERTAD4-AS1Q5TG53 156 aa8.8□□□□□ -1
VPS13A-205ENST00000376636 PRAC2D3DTV9 90 aa8.8□□□□□ -1
VPS13A-205ENST00000376636 C6orf99Q4VX62 202 aa8.8□□□□□ -1
VPS13A-205ENST00000376636 Q6Q795 121 aa8.8□□□□□ -1
VPS13A-205ENST00000376636 CEMP1Q6PRD7 247 aaPredicted RBP8.8□□□□□ -1
VPS13A-205ENST00000376636 MAP6D1Q9H9H5 199 aa8.8□□□□□ -1
VPS13A-205ENST00000376636 CCDC179H3BU77 68 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 PATE2Q6UY27 113 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 ZNF524Q96C55 264 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 EBI3Q14213 229 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.79□□□□□ -1
VPS13A-205ENST00000376636 ODF3L1Q8IXM7 274 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 RITA1Q96K30 269 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 FAM215AQ9Y5M1 114 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 LINC00322Q6ZN03 302 aaPredicted RBP8.79□□□□□ -1
VPS13A-205ENST00000376636 LST1O00453 97 aa8.79□□□□□ -1
VPS13A-205ENST00000376636 IGKV2-28A0A075B6P5 120 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 IGKV2D-28P01615 120 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 CDKN2A-AS1Q9UH64 79 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 MRPS12O15235 138 aaKnown RBP8.78□□□□□ -1
VPS13A-205ENST00000376636 M0R378 163 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 Q6JHZ5 121 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 TP73-AS1Q9UF72 201 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 LINC01548A6NM66 108 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 LY6LH3BQJ8 138 aa8.78□□□□□ -1
VPS13A-205ENST00000376636 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.77□□□□□ -1
VPS13A-205ENST00000376636 SLX1AQ9BQ83 275 aa8.77□□□□□ -1
VPS13A-205ENST00000376636 C11orf53Q8IXP5 236 aa8.77□□□□□ -1.01
VPS13A-205ENST00000376636 HRCT1Q6UXD1 115 aa8.77□□□□□ -1.01
VPS13A-205ENST00000376636 IGLV4-3A0A075B6K6 122 aa8.77□□□□□ -1.01
VPS13A-205ENST00000376636 PROK2Q9HC23 129 aa8.77□□□□□ -1.01
VPS13A-205ENST00000376636 TRBV6-8A0A0A6YYG3 113 aa8.77□□□□□ -1.01
VPS13A-205ENST00000376636 RSPO1Q2MKA7 263 aaPredicted RBP8.77□□□□□ -1.01
VPS13A-205ENST00000376636 DCANP1Q8TF63 244 aa8.77□□□□□ -1.01
VPS13A-205ENST00000376636 M0QXV9 152 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 THSD7BQ9C0I4 1608 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 NOTCH2Q04721 2471 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 ESRGQ1W209 222 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 C22orf34Q6ZV56 151 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 Q8N976 141 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 SYCNQ0VAF6 134 aa8.76□□□□□ -1.01
VPS13A-205ENST00000376636 IGHV4-61A0A0C4DH41 118 aa8.75□□□□□ -1.01
VPS13A-205ENST00000376636 Q6ZQY7 126 aa8.75□□□□□ -1.01
VPS13A-205ENST00000376636 DEFB131BA0A096LNP1 70 aa8.75□□□□□ -1.01
VPS13A-205ENST00000376636 XAGE1AQ9HD64 81 aa8.75□□□□□ -1.01
VPS13A-205ENST00000376636 HIVEP3Q5T1R4 2406 aa8.75□□□□□ -1.01
VPS13A-205ENST00000376636 ZNF22P17026 224 aaPredicted RBP8.75□□□□□ -1.01
VPS13A-205ENST00000376636 CFAP126Q5VTH2 177 aa8.75□□□□□ -1.01
VPS13A-205ENST00000376636 CD164L2Q6UWJ8 174 aa8.74□□□□□ -1.01
VPS13A-205ENST00000376636 ZNF73O43830 326 aaPredicted RBP8.74□□□□□ -1.01
VPS13A-205ENST00000376636 PYGO1Q9Y3Y4 419 aa8.74□□□□□ -1.01
VPS13A-205ENST00000376636 Q6ZTI0 123 aa8.74□□□□□ -1.01
VPS13A-205ENST00000376636 LOC107984640A0A0U1RRK4 108 aa8.73□□□□□ -1.01
VPS13A-205ENST00000376636 IGF1P05019 195 aa8.73□□□□□ -1.01
VPS13A-205ENST00000376636 TRBV6-4A0A1B0GX49 114 aa8.73□□□□□ -1.01
VPS13A-205ENST00000376636 YPEL4Q96NS1 127 aa8.73□□□□□ -1.01
VPS13A-205ENST00000376636 IGLV9-49A0A0B4J1Y8 123 aa8.73□□□□□ -1.01
VPS13A-205ENST00000376636 KRTAP27-1Q3LI81 207 aa8.72□□□□□ -1.01
VPS13A-205ENST00000376636 UNQ9165/PRO28630Q6UXU0 137 aa8.72□□□□□ -1.01
VPS13A-205ENST00000376636 LY6G6EA0A0G2JKS1 128 aa8.72□□□□□ -1.01
VPS13A-205ENST00000376636 PSPHP1O15172 72 aa8.72□□□□□ -1.01
VPS13A-205ENST00000376636 U3KQK5 164 aa8.72□□□□□ -1.01
VPS13A-205ENST00000376636 IGLV4-69A0A075B6H9 119 aa8.72□□□□□ -1.01
VPS13A-205ENST00000376636 RBX1P62877 108 aa8.71□□□□□ -1.01
VPS13A-205ENST00000376636 X6R8D5 127 aa8.71□□□□□ -1.01
VPS13A-205ENST00000376636 SMIM11BQ8TCY0 68 aa8.71□□□□□ -1.01
VPS13A-205ENST00000376636 LINC00526Q96FQ7 95 aa8.71□□□□□ -1.02
VPS13A-205ENST00000376636 M0QY20 66 aa8.71□□□□□ -1.02
VPS13A-205ENST00000376636 CCDC140Q96MF4 163 aa8.71□□□□□ -1.02
VPS13A-205ENST00000376636 LINC00208Q96KT6 92 aa8.7□□□□□ -1.02
VPS13A-205ENST00000376636 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.7□□□□□ -1.02
VPS13A-205ENST00000376636 SOSTDC1Q6X4U4 206 aa8.7□□□□□ -1.02
VPS13A-205ENST00000376636 CELA1Q9UNI1 258 aa8.7□□□□□ -1.02
VPS13A-205ENST00000376636 LIMD2Q9BT23 127 aa8.7□□□□□ -1.02
VPS13A-205ENST00000376636 TP53TG3Q9ULZ0 132 aa8.69□□□□□ -1.02
VPS13A-205ENST00000376636 NANOS2P60321 138 aaKnown RBP8.69□□□□□ -1.02
VPS13A-205ENST00000376636 PPDPFQ9H3Y8 114 aa8.69□□□□□ -1.02
VPS13A-205ENST00000376636 ZFYVE26Q68DK2 2539 aa8.68□□□□□ -1.02
VPS13A-205ENST00000376636 XGP55808 180 aa8.68□□□□□ -1.02
VPS13A-205ENST00000376636 WDR87Q6ZQQ6 2873 aa8.68□□□□□ -1.02
VPS13A-205ENST00000376636 IGLV1-47P01700 117 aa8.68□□□□□ -1.02
VPS13A-205ENST00000376636 NTM-AS1Q6ZSK4 140 aa8.68□□□□□ -1.02
VPS13A-205ENST00000376636 DNAJC9-AS1A6NH13 148 aa8.68□□□□□ -1.02
VPS13A-205ENST00000376636 IGLV2-14P01704 120 aa8.67□□□□□ -1.02
VPS13A-205ENST00000376636 RPL28P46779 137 aaKnown RBP8.67□□□□□ -1.02
VPS13A-205ENST00000376636 PLAC8L1A1L4L8 177 aa8.67□□□□□ -1.02
VPS13A-205ENST00000376636 A8MZ25 164 aa8.67□□□□□ -1.02
VPS13A-205ENST00000376636 A6NDX4 124 aa8.67□□□□□ -1.02
VPS13A-205ENST00000376636 ZNF80P51504 273 aaPredicted RBP8.66□□□□□ -1.02
VPS13A-205ENST00000376636 LINC01547P58512 204 aaPredicted RBP8.66□□□□□ -1.02
VPS13A-205ENST00000376636 LOC100131303A0A0U1RQF7 123 aa8.66□□□□□ -1.02
VPS13A-205ENST00000376636 SPRNQ5BIV9 151 aa8.66□□□□□ -1.02
VPS13A-205ENST00000376636 PRO0628Q9UI54 55 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms