RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 BRI3O95415 125 aa10.48□□□□□ -0.73
CPSF7-201ENST00000340437 RPL13AP40429 203 aaKnown RBP10.48□□□□□ -0.73
CPSF7-201ENST00000340437 YAE1D1Q9NRH1 226 aa10.48□□□□□ -0.73
CPSF7-201ENST00000340437 COX6CP09669 75 aa10.48□□□□□ -0.73
CPSF7-201ENST00000340437 ZNF415Q09FC8 603 aa10.48□□□□□ -0.73
CPSF7-201ENST00000340437 RPL35AP18077 110 aaKnown RBP10.48□□□□□ -0.73
CPSF7-201ENST00000340437 ICOSQ9Y6W8 199 aa10.48□□□□□ -0.73
CPSF7-201ENST00000340437 BBC3Q96PG8 261 aaPredicted RBP10.47□□□□□ -0.73
CPSF7-201ENST00000340437 TRAV8-4A0A0B4J246 113 aa10.47□□□□□ -0.73
CPSF7-201ENST00000340437 CRLF1O75462 422 aa10.47□□□□□ -0.73
CPSF7-201ENST00000340437 MEIG1Q5JSS6 88 aa10.47□□□□□ -0.73
CPSF7-201ENST00000340437 ODF3Q96PU9 254 aa10.47□□□□□ -0.73
CPSF7-201ENST00000340437 A0A0B4J2C4 111 aa10.47□□□□□ -0.73
CPSF7-201ENST00000340437 ZNF702PQ9H963 129 aa10.47□□□□□ -0.73
CPSF7-201ENST00000340437 TRAV4A0A0B4J268 109 aa10.46□□□□□ -0.73
CPSF7-201ENST00000340437 TTC32Q5I0X7 151 aa10.46□□□□□ -0.73
CPSF7-201ENST00000340437 VSIG2Q96IQ7 327 aa10.46□□□□□ -0.73
CPSF7-201ENST00000340437 CHCHD7Q9BUK0 85 aa10.46□□□□□ -0.73
CPSF7-201ENST00000340437 COX6A2Q02221 97 aa10.46□□□□□ -0.74
CPSF7-201ENST00000340437 GAGE2BQ13066 116 aa10.46□□□□□ -0.74
CPSF7-201ENST00000340437 GAGE2EQ4V326 116 aa10.46□□□□□ -0.74
CPSF7-201ENST00000340437 Q9H8V8 135 aa10.46□□□□□ -0.74
CPSF7-201ENST00000340437 GAGE2DQ9UEU5 116 aa10.46□□□□□ -0.74
CPSF7-201ENST00000340437 UBE2D4Q9Y2X8 147 aa10.46□□□□□ -0.74
CPSF7-201ENST00000340437 TMEM262E9PQX1 116 aa10.45□□□□□ -0.74
CPSF7-201ENST00000340437 MRPS36P82909 103 aaKnown RBP10.45□□□□□ -0.74
CPSF7-201ENST00000340437 FAM104AQ969W3 186 aa10.45□□□□□ -0.74
CPSF7-201ENST00000340437 GAGE12JA6NER3 117 aa10.45□□□□□ -0.74
CPSF7-201ENST00000340437 GAGE4Q13068 117 aa10.45□□□□□ -0.74
CPSF7-201ENST00000340437 GAGE5Q13069 117 aa10.45□□□□□ -0.74
CPSF7-201ENST00000340437 UBE2WQ96B02 151 aa10.45□□□□□ -0.74
CPSF7-201ENST00000340437 MAP6D1Q9H9H5 199 aa10.44□□□□□ -0.74
CPSF7-201ENST00000340437 TOMM7Q9P0U1 55 aa10.44□□□□□ -0.74
CPSF7-201ENST00000340437 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.43□□□□□ -0.74
CPSF7-201ENST00000340437 C15orf53Q8NAA6 179 aa10.43□□□□□ -0.74
CPSF7-201ENST00000340437 LITAFQ99732 161 aa10.43□□□□□ -0.74
CPSF7-201ENST00000340437 LINC00694P0DN24 101 aa10.43□□□□□ -0.74
CPSF7-201ENST00000340437 MIAQ16674 131 aa10.43□□□□□ -0.74
CPSF7-201ENST00000340437 STHQ8IWL8 128 aa10.43□□□□□ -0.74
CPSF7-201ENST00000340437 SS18L2Q9UHA2 77 aa10.43□□□□□ -0.74
CPSF7-201ENST00000340437 WFDC11Q8NEX6 87 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 TMEM101Q96IK0 257 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 TRBV10-2A0A0K0K1G8 114 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 B5MCH6 92 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 CIRBPQ14011 172 aaKnown RBP10.42□□□□□ -0.74
CPSF7-201ENST00000340437 H7C423 109 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 INSP01308 110 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 SBSPONQ8IVN8 264 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 PEMTQ9UBM1 199 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 PYGO1Q9Y3Y4 419 aa10.42□□□□□ -0.74
CPSF7-201ENST00000340437 SETXQ7Z333 2677 aaKnown RBP10.41□□□□□ -0.74
CPSF7-201ENST00000340437 TINCRA0A1B0GVN0 87 aa10.41□□□□□ -0.74
CPSF7-201ENST00000340437 PRIMA1Q86XR5 153 aa10.41□□□□□ -0.74
CPSF7-201ENST00000340437 TMEM89A2RUT3 159 aa10.41□□□□□ -0.74
CPSF7-201ENST00000340437 SPANXA1Q9NS26 97 aa10.4□□□□□ -0.74
CPSF7-201ENST00000340437 Q6YL49 198 aa10.4□□□□□ -0.74
CPSF7-201ENST00000340437 Q6ZTI0 123 aa10.4□□□□□ -0.74
CPSF7-201ENST00000340437 TRBV30A0A0K0K1B3 111 aa10.4□□□□□ -0.74
CPSF7-201ENST00000340437 PLA2G2AP14555 144 aa10.39□□□□□ -0.75
CPSF7-201ENST00000340437 NOP10Q9NPE3 64 aaKnown RBP10.39□□□□□ -0.75
CPSF7-201ENST00000340437 NBEAL1Q6ZS30 2694 aa10.39□□□□□ -0.75
CPSF7-201ENST00000340437 C3orf56Q8N813 242 aa10.38□□□□□ -0.75
CPSF7-201ENST00000340437 C11orf68Q9H3H3 251 aaKnown RBP10.38□□□□□ -0.75
CPSF7-201ENST00000340437 DSCR9P59020 149 aa10.38□□□□□ -0.75
CPSF7-201ENST00000340437 WFDC10AQ9H1F0 79 aa10.38□□□□□ -0.75
CPSF7-201ENST00000340437 PIK3CD-AS1Q5SR53 167 aa10.38□□□□□ -0.75
CPSF7-201ENST00000340437 A0A096LPF7 62 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 DEFB114Q30KQ6 69 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 TRGV2A0A075B6R0 118 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 UBE2L6O14933 153 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 GAGE7O76087 117 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 GAGE12FP0CL80 117 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 GAGE12GP0CL81 117 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 GAGE12IP0CL82 117 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 IGHV4-31P0DP07 118 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 F8P00451 2351 aa10.37□□□□□ -0.75
CPSF7-201ENST00000340437 MAST4O15021 2626 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 RPL36AP83881 106 aaKnown RBP10.36□□□□□ -0.75
CPSF7-201ENST00000340437 C11orf72Q8NBR9 251 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 RPL36ALQ969Q0 106 aaKnown RBP10.36□□□□□ -0.75
CPSF7-201ENST00000340437 APCP25054 2843 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 LOC100131303A0A0U1RQF7 123 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 HTN3P15516 51 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 LINC00242Q5T6M2 205 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 ESM1Q9NQ30 184 aa10.36□□□□□ -0.75
CPSF7-201ENST00000340437 LINC00308Q8TCZ7 52 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 SPANXDQ9BXN6 97 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 SPANXCQ9NY87 97 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 Q8N2B8 174 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 SMR3AQ99954 134 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 MGAM2Q2M2H8 2515 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 DEFB130BP0DP73 79 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 DEFB130AP0DP74 79 aa10.35□□□□□ -0.75
CPSF7-201ENST00000340437 GAGE6Q13070 117 aa10.34□□□□□ -0.75
CPSF7-201ENST00000340437 ODF3L2Q3SX64 289 aa10.34□□□□□ -0.75
CPSF7-201ENST00000340437 CITED2Q99967 270 aaPredicted RBP10.34□□□□□ -0.75
CPSF7-201ENST00000340437 J3QLI3 93 aa10.33□□□□□ -0.76
CPSF7-201ENST00000340437 C1orf158Q8N1D5 194 aa10.33□□□□□ -0.76
CPSF7-201ENST00000340437 CCDC179H3BU77 68 aa10.33□□□□□ -0.76
CPSF7-201ENST00000340437 IFITM1P13164 125 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms