RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 NFE4Q86UQ8 179 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 TIMM21Q9BVV7 248 aa9.39□□□□□ -0.91
HMGB1-202ENST00000339872 TRAV8-6A0A0B4J262 113 aa9.38□□□□□ -0.91
HMGB1-202ENST00000339872 A0A0J9YY99 117 aa9.38□□□□□ -0.91
HMGB1-202ENST00000339872 DLEU1O43261 78 aa9.38□□□□□ -0.91
HMGB1-202ENST00000339872 HTN3P15516 51 aa9.38□□□□□ -0.91
HMGB1-202ENST00000339872 MRPS36P82909 103 aaKnown RBP9.38□□□□□ -0.91
HMGB1-202ENST00000339872 TMEM97Q5BJF2 176 aa9.38□□□□□ -0.91
HMGB1-202ENST00000339872 C2orf88Q9BSF0 95 aa9.38□□□□□ -0.91
HMGB1-202ENST00000339872 HINT1P49773 126 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-202ENST00000339872 ATP6V0E2Q8NHE4 81 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 TRBV6-8A0A0A6YYG3 113 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 TEX48A0A1B0GUV7 120 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 E9PLD3 99 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 F5H768 121 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 HERVK_113P61574 105 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 AMMECR1LQ6DCA0 310 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 VSIG2Q96IQ7 327 aa9.37□□□□□ -0.91
HMGB1-202ENST00000339872 DNAH3Q8TD57 4116 aa9.36□□□□□ -0.91
HMGB1-202ENST00000339872 A0A096LPF7 62 aa9.36□□□□□ -0.91
HMGB1-202ENST00000339872 SMAGPQ0VAQ4 97 aa9.36□□□□□ -0.91
HMGB1-202ENST00000339872 LBHQ53QV2 105 aaPredicted RBP9.36□□□□□ -0.91
HMGB1-202ENST00000339872 TRAV26-1A0A087WT03 109 aa9.36□□□□□ -0.91
HMGB1-202ENST00000339872 OR5A1Q8NGJ0 315 aa9.36□□□□□ -0.91
HMGB1-202ENST00000339872 CSDC2Q9Y534 153 aaKnown RBP9.36□□□□□ -0.91
HMGB1-202ENST00000339872 ZNF22P17026 224 aaPredicted RBP9.35□□□□□ -0.91
HMGB1-202ENST00000339872 GAGE6Q13070 117 aa9.35□□□□□ -0.91
HMGB1-202ENST00000339872 MPV17L2Q567V2 206 aa9.35□□□□□ -0.91
HMGB1-202ENST00000339872 MAPKAPK5-AS1Q8N8E1 139 aa9.35□□□□□ -0.91
HMGB1-202ENST00000339872 CHCHD5Q9BSY4 110 aa9.35□□□□□ -0.91
HMGB1-202ENST00000339872 H7C423 109 aa9.34□□□□□ -0.91
HMGB1-202ENST00000339872 TMEM101Q96IK0 257 aa9.34□□□□□ -0.91
HMGB1-202ENST00000339872 SIVA1O15304 175 aa9.34□□□□□ -0.91
HMGB1-202ENST00000339872 C11orf68Q9H3H3 251 aaKnown RBP9.34□□□□□ -0.91
HMGB1-202ENST00000339872 K7EIL1 84 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 UBE2D1P51668 147 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 C12orf74Q32Q52 190 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 TINCRA0A1B0GVN0 87 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 TMEM223A0PJW6 202 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 CDC42SE2Q9NRR3 84 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 NOTCH1P46531 2555 aa9.33□□□□□ -0.92
HMGB1-202ENST00000339872 IGHV3-64A0A075B6Q5 118 aa9.32□□□□□ -0.92
HMGB1-202ENST00000339872 A0A0J9YWU9 116 aa9.32□□□□□ -0.92
HMGB1-202ENST00000339872 MYMXA0A1B0GTQ4 84 aa9.32□□□□□ -0.92
HMGB1-202ENST00000339872 ZNF25P17030 456 aaPredicted RBP9.32□□□□□ -0.92
HMGB1-202ENST00000339872 DEFB121Q5J5C9 76 aa9.32□□□□□ -0.92
HMGB1-202ENST00000339872 GEMIN7Q9H840 131 aaKnown RBP9.32□□□□□ -0.92
HMGB1-202ENST00000339872 BVES-AS1Q5T3Y7 98 aa9.31□□□□□ -0.92
HMGB1-202ENST00000339872 TRAV13-1A0A0B4J241 112 aa9.31□□□□□ -0.92
HMGB1-202ENST00000339872 ZNF815PA8K554 130 aa9.31□□□□□ -0.92
HMGB1-202ENST00000339872 TSPEAR-AS2P59090 65 aa9.31□□□□□ -0.92
HMGB1-202ENST00000339872 KPRPQ5T749 579 aaPredicted RBP9.31□□□□□ -0.92
HMGB1-202ENST00000339872 LINC00469Q8N7U9 141 aa9.31□□□□□ -0.92
HMGB1-202ENST00000339872 HIGD1BQ9P298 99 aa9.31□□□□□ -0.92
HMGB1-202ENST00000339872 COL5A1-AS1Q5SY13 56 aa9.3□□□□□ -0.92
HMGB1-202ENST00000339872 MRAPQ8TCY5 172 aa9.3□□□□□ -0.92
HMGB1-202ENST00000339872 IGLV4-60A0A075B6I1 120 aa9.3□□□□□ -0.92
HMGB1-202ENST00000339872 HSD52Q0P140 79 aa9.3□□□□□ -0.92
HMGB1-202ENST00000339872 Q6ZTC4 211 aa9.3□□□□□ -0.92
HMGB1-202ENST00000339872 ICOSQ9Y6W8 199 aa9.3□□□□□ -0.92
HMGB1-202ENST00000339872 J3QQQ9 107 aa9.29□□□□□ -0.92
HMGB1-202ENST00000339872 LEPROTO15243 131 aa9.29□□□□□ -0.92
HMGB1-202ENST00000339872 LGALS3P17931 250 aaKnown RBP9.29□□□□□ -0.92
HMGB1-202ENST00000339872 MRPL23Q16540 153 aaKnown RBP9.29□□□□□ -0.92
HMGB1-202ENST00000339872 SPATA25Q9BR10 227 aa9.29□□□□□ -0.92
HMGB1-202ENST00000339872 A0A1B0GV90 55 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 LINC00242Q5T6M2 205 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 TRAV8-3A0A0A6YYJ7 113 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 TMEM262E9PQX1 116 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 TIRAPP58753 221 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 HERVK_113P63121 156 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 COX6A2Q02221 97 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 CDKN2A-AS1Q9UH64 79 aa9.28□□□□□ -0.92
HMGB1-202ENST00000339872 IGKV3OR2-268A0A0C4DH90 116 aa9.27□□□□□ -0.92
HMGB1-202ENST00000339872 SPINK8P0C7L1 97 aa9.27□□□□□ -0.92
HMGB1-202ENST00000339872 SEC11AP67812 179 aa9.27□□□□□ -0.92
HMGB1-202ENST00000339872 SCGB1D4Q6XE38 83 aa9.27□□□□□ -0.92
HMGB1-202ENST00000339872 TM2D3Q9BRN9 247 aa9.27□□□□□ -0.92
HMGB1-202ENST00000339872 NBEAL1Q6ZS30 2694 aa9.27□□□□□ -0.93
HMGB1-202ENST00000339872 IGLV5-45A0A087WSX0 123 aa9.27□□□□□ -0.93
HMGB1-202ENST00000339872 FAM19A3Q7Z5A8 133 aa9.27□□□□□ -0.93
HMGB1-202ENST00000339872 PLEKHB2Q96CS7 222 aa9.27□□□□□ -0.93
HMGB1-202ENST00000339872 TENM3Q9P273 2699 aa9.26□□□□□ -0.93
HMGB1-202ENST00000339872 H3BRM9 83 aa9.26□□□□□ -0.93
HMGB1-202ENST00000339872 IGHV3-30-3P0DP02 117 aa9.26□□□□□ -0.93
HMGB1-202ENST00000339872 NANOS2P60321 138 aaKnown RBP9.26□□□□□ -0.93
HMGB1-202ENST00000339872 SH2D6Q7Z4S9 175 aa9.26□□□□□ -0.93
HMGB1-202ENST00000339872 C11orf45Q8TAV5 145 aa9.26□□□□□ -0.93
HMGB1-202ENST00000339872 IGHV1-58A0A0C4DH39 117 aa9.26□□□□□ -0.93
HMGB1-202ENST00000339872 RBX1P62877 108 aa9.25□□□□□ -0.93
HMGB1-202ENST00000339872 MGAM2Q2M2H8 2515 aa9.25□□□□□ -0.93
HMGB1-202ENST00000339872 GCSHP23434 173 aa9.25□□□□□ -0.93
HMGB1-202ENST00000339872 ORAOV1Q8WV07 137 aa9.25□□□□□ -0.93
HMGB1-202ENST00000339872 A0A1B0GUV1 79 aa9.24□□□□□ -0.93
HMGB1-202ENST00000339872 HIST1H4GQ99525 98 aa9.24□□□□□ -0.93
HMGB1-202ENST00000339872 DEFB131BA0A096LNP1 70 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 H3BNG1 76 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 LELP1Q5T871 98 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 FXYD2P54710 66 aa9.22□□□□□ -0.93
HMGB1-202ENST00000339872 TAL2Q16559 108 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms