RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TIRAPP58753 221 aa5.05□□□□□ -1.6
SF3B1-201ENST00000335508 ZZEF1O43149 2961 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 TRAV8-3A0A0A6YYJ7 113 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 TRAV8-4A0A0B4J246 113 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 ATXN8Q156A1 80 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 HRCT1Q6UXD1 115 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 TOMM6Q96B49 74 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 DEFB131BA0A096LNP1 70 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 E9PLD3 99 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 INAFM2P0DMQ5 153 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 IGHV4-30-4P0DP06 118 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 SNHG12Q9BXW3 62 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 NXPH4O95158 308 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 FRMD6-AS1P0C7T7 363 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 KIR3DS1Q14943 382 aa5.04□□□□□ -1.6
SF3B1-201ENST00000335508 BEAN1Q3B7T3 259 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 LINC00467Q9BRT7 94 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 DKK2Q9UBU2 259 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 DMBT1Q9UGM3 2413 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-201ENST00000335508 GDF5OSQ5U4N7 250 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 ZNF625Q96I27 306 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-201ENST00000335508 CSDC2Q9Y534 153 aaKnown RBP5.03□□□□□ -1.6
SF3B1-201ENST00000335508 CFAP54Q96N23 3096 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 IGHV3-64A0A075B6Q5 118 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-201ENST00000335508 IGKV2-29A2NJV5 120 aaPredicted RBP5.03□□□□□ -1.6
SF3B1-201ENST00000335508 CFAP126Q5VTH2 177 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 C15orf53Q8NAA6 179 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 YPEL4Q96NS1 127 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 IGKV2D-24A0A075B6R9 120 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 GAGE2BQ13066 116 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 GAGE2EQ4V326 116 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 MUC7Q8TAX7 377 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 GAGE2DQ9UEU5 116 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 ZANQ9Y493 2812 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 H3BS24 57 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 C5orf38Q86SI9 138 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 PRO1854Q9UHT4 67 aa5.03□□□□□ -1.6
SF3B1-201ENST00000335508 C14orf177Q52M58 125 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 KLK12Q9UKR0 248 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 U3KQK5 164 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 TRBV6-8A0A0A6YYG3 113 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 NDUFA1O15239 70 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 PRR9Q5T870 116 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 Q9H8V8 135 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 SCRT2Q9NQ03 307 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 APCP25054 2843 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 TRAV13-2A0A0B4J235 113 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 C11orf86A6NJI1 115 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 J3KT08 172 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 NUPR1O60356 82 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 XCL1P47992 114 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 CAMK2N2Q96S95 79 aa5.02□□□□□ -1.61
SF3B1-201ENST00000335508 PFN2P35080 140 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 RPL39P62891 51 aaKnown RBP5.01□□□□□ -1.61
SF3B1-201ENST00000335508 C18orf65Q6ZTR6 163 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 C1orf158Q8N1D5 194 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 DEFB104AQ8WTQ1 72 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 IGHV4-28A0A0C4DH34 117 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 RBX1P62877 108 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 SAMD5Q5TGI4 173 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 TENM3Q9P273 2699 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 SPAG11BQ08648 103 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 MIAQ16674 131 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 A0A096LPF7 62 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 IGHV1-58A0A0C4DH39 117 aa5.01□□□□□ -1.61
SF3B1-201ENST00000335508 CDK2AP2O75956 126 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 MRPS36P82909 103 aaKnown RBP5□□□□□ -1.61
SF3B1-201ENST00000335508 H0YGX0 51 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 NKAPP1Q8N9T2 125 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 PPDPFQ9H3Y8 114 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 A0A0J9YXY3 114 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 FAM236DA0A1B0GTK5 79 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 GAGE12HA6NDE8 117 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 FAM236CP0DP71 79 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 LELP1Q5T871 98 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 NBEAL2Q6ZNJ1 2754 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 UBE2D3P61077 147 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 UBE2D2P62837 147 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 DEFB4AO15263 64 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 NEXN-AS1Q8NBZ9 246 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 RNF185Q96GF1 192 aa5□□□□□ -1.61
SF3B1-201ENST00000335508 PRB2P02812 416 aaPredicted RBP4.99□□□□□ -1.61
SF3B1-201ENST00000335508 NRACQ8N912 160 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 TP53TG3Q9ULZ0 132 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 TRACP01848 142 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 A8MTW9 85 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 C9JAW5 83 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 IGHV3-30-3P0DP02 117 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 Q9HAA7 133 aa4.99□□□□□ -1.61
SF3B1-201ENST00000335508 IGLV4-3A0A075B6K6 122 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 SERTAD4-AS1Q5TG53 156 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 Q6ZQT7 251 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 WFDC10AQ9H1F0 79 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 UFSP1Q6NVU6 142 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 LINC00173Q6ZV60 143 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 K7EP13 123 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 NHLRC4P0CG21 123 aaPredicted RBP4.98□□□□□ -1.61
SF3B1-201ENST00000335508 SPTSSBQ8NFR3 76 aa4.98□□□□□ -1.61
SF3B1-201ENST00000335508 TMEM126AQ9H061 195 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms