RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 CBY1Q9Y3M2 126 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE12JA6NER3 117 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 APOMO95445 188 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE4Q13068 117 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE5Q13069 117 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 GAGE13Q4V321 117 aa17.09■□□□□ 0.33
TRIM54-201ENST00000296098 JMJD1CQ15652 2540 aa17.08■□□□□ 0.33
TRIM54-201ENST00000296098 TMEM238C9JI98 176 aa17.08■□□□□ 0.33
TRIM54-201ENST00000296098 K7ERU9 68 aa17.08■□□□□ 0.33
TRIM54-201ENST00000296098 NIPBLQ6KC79 2804 aaeCLIP17.08■□□□□ 0.32
TRIM54-201ENST00000296098 A0A0J9YXY3 114 aa17.07■□□□□ 0.32
TRIM54-201ENST00000296098 VSIG2Q96IQ7 327 aa17.07■□□□□ 0.32
TRIM54-201ENST00000296098 INAFM1C9JVW0 142 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 CIDEAO60543 219 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 TSPAN13O95857 204 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 RNF151Q2KHN1 245 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 NTM-AS1Q6ZSK4 140 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 SPINK8P0C7L1 97 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 LINC00694P0DN24 101 aa17.06■□□□□ 0.32
TRIM54-201ENST00000296098 CFC1BP0CG36 223 aa17.04■□□□□ 0.32
TRIM54-201ENST00000296098 CFC1P0CG37 223 aa17.04■□□□□ 0.32
TRIM54-201ENST00000296098 TIRAPP58753 221 aa17.04■□□□□ 0.32
TRIM54-201ENST00000296098 SBSPONQ8IVN8 264 aa17.04■□□□□ 0.32
TRIM54-201ENST00000296098 IGLV5-45A0A087WSX0 123 aa17.04■□□□□ 0.32
TRIM54-201ENST00000296098 NDUFA12Q9UI09 145 aa17.04■□□□□ 0.32
TRIM54-201ENST00000296098 CSDC2Q9Y534 153 aaKnown RBP17.04■□□□□ 0.32
TRIM54-201ENST00000296098 TRBV6-4A0A1B0GX49 114 aa17.03■□□□□ 0.32
TRIM54-201ENST00000296098 H3BMG7 143 aa17.03■□□□□ 0.32
TRIM54-201ENST00000296098 HECTD1Q9ULT8 2610 aa17.03■□□□□ 0.32
TRIM54-201ENST00000296098 SMAGPQ0VAQ4 97 aa17.03■□□□□ 0.32
TRIM54-201ENST00000296098 CDKN2A-AS1Q9UH64 79 aa17.03■□□□□ 0.32
TRIM54-201ENST00000296098 TRGV4A0A0C4DH28 118 aa17.02■□□□□ 0.32
TRIM54-201ENST00000296098 RPL24P83731 157 aaKnown RBP17.02■□□□□ 0.32
TRIM54-201ENST00000296098 GTSF1LQ9H1H1 148 aa17.01■□□□□ 0.31
TRIM54-201ENST00000296098 A4D1N5 150 aa17.01■□□□□ 0.31
TRIM54-201ENST00000296098 F8W1H4 67 aa17.01■□□□□ 0.31
TRIM54-201ENST00000296098 HERVK_113P63121 156 aa17■□□□□ 0.31
TRIM54-201ENST00000296098 MUSTN1Q8IVN3 82 aa17■□□□□ 0.31
TRIM54-201ENST00000296098 LOC100131303A0A0U1RQF7 123 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 A8MZ25 164 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 ZFAND6Q6FIF0 208 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 LITAFQ99732 161 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 TMEM243Q9BU79 118 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 INSL3P51460 131 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 LYRM7Q5U5X0 104 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 PRO1854Q9UHT4 67 aa16.99■□□□□ 0.31
TRIM54-201ENST00000296098 LINC00242Q5T6M2 205 aa16.98■□□□□ 0.31
TRIM54-201ENST00000296098 FAM19A3Q7Z5A8 133 aa16.98■□□□□ 0.31
TRIM54-201ENST00000296098 LOC107984156A0A0G2JMH3 177 aa16.97■□□□□ 0.31
TRIM54-201ENST00000296098 UBE2L6O14933 153 aa16.97■□□□□ 0.31
TRIM54-201ENST00000296098 ARL17AQ8IVW1 177 aa16.97■□□□□ 0.31
TRIM54-201ENST00000296098 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.97■□□□□ 0.31
TRIM54-201ENST00000296098 CRLF1O75462 422 aa16.97■□□□□ 0.31
TRIM54-201ENST00000296098 COX6A2Q02221 97 aa16.97■□□□□ 0.31
TRIM54-201ENST00000296098 NOTCH3Q9UM47 2321 aa16.97■□□□□ 0.31
TRIM54-201ENST00000296098 FHL2Q14192 279 aa16.96■□□□□ 0.31
TRIM54-201ENST00000296098 C9orf66Q5T8R8 295 aa16.96■□□□□ 0.31
TRIM54-201ENST00000296098 SFTA2Q6UW10 78 aa16.96■□□□□ 0.31
TRIM54-201ENST00000296098 VPS25Q9BRG1 176 aa16.96■□□□□ 0.31
TRIM54-201ENST00000296098 CDC42SE2Q9NRR3 84 aa16.96■□□□□ 0.31
TRIM54-201ENST00000296098 OTOGQ6ZRI0 2925 aa16.96■□□□□ 0.31
TRIM54-201ENST00000296098 A0A0B4J2C4 111 aa16.96■□□□□ 0.3
TRIM54-201ENST00000296098 TRAV16A0A0A6YYK6 109 aaPredicted RBP16.95■□□□□ 0.3
TRIM54-201ENST00000296098 TMEM101Q96IK0 257 aa16.95■□□□□ 0.3
TRIM54-201ENST00000296098 SPANXDQ9BXN6 97 aa16.95■□□□□ 0.3
TRIM54-201ENST00000296098 SPANXCQ9NY87 97 aa16.95■□□□□ 0.3
TRIM54-201ENST00000296098 TRAV13-1A0A0B4J241 112 aa16.94■□□□□ 0.3
TRIM54-201ENST00000296098 EIF4EBP3O60516 100 aaPredicted RBP16.94■□□□□ 0.3
TRIM54-201ENST00000296098 WFDC2Q14508 124 aa16.94■□□□□ 0.3
TRIM54-201ENST00000296098 SPATA3Q8NHX4 192 aa16.94■□□□□ 0.3
TRIM54-201ENST00000296098 PRO0461Q9UI25 63 aa16.94■□□□□ 0.3
TRIM54-201ENST00000296098 G3V4G9 280 aa16.93■□□□□ 0.3
TRIM54-201ENST00000296098 H7C423 109 aa16.93■□□□□ 0.3
TRIM54-201ENST00000296098 KIR2DL5BQ8NHK3 375 aa16.93■□□□□ 0.3
TRIM54-201ENST00000296098 IGLV5-39A0A0G2JS06 123 aa16.92■□□□□ 0.3
TRIM54-201ENST00000296098 NDUFA1O15239 70 aa16.92■□□□□ 0.3
TRIM54-201ENST00000296098 MIAQ16674 131 aa16.92■□□□□ 0.3
TRIM54-201ENST00000296098 ADAMTSL4-AS1Q5T5F5 129 aa16.92■□□□□ 0.3
TRIM54-201ENST00000296098 PSMB2P49721 201 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 MTURNQ8N3F0 131 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 TEX48A0A1B0GUV7 120 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 TIMM17BO60830 172 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 DEFB130BP0DP73 79 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 DEFB130AP0DP74 79 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 LINC00612Q8N6U2 182 aa16.91■□□□□ 0.3
TRIM54-201ENST00000296098 IGHV3-33P01772 117 aa16.9■□□□□ 0.3
TRIM54-201ENST00000296098 PRSS2P07478 247 aa16.9■□□□□ 0.3
TRIM54-201ENST00000296098 X6R8D5 127 aa16.9■□□□□ 0.3
TRIM54-201ENST00000296098 SMIM1B2RUZ4 78 aa16.89■□□□□ 0.29
TRIM54-201ENST00000296098 ERG28Q9UKR5 140 aa16.88■□□□□ 0.29
TRIM54-201ENST00000296098 NSD1Q96L73 2696 aaPredicted RBP16.88■□□□□ 0.29
TRIM54-201ENST00000296098 C2CD3Q4AC94 2353 aa16.88■□□□□ 0.29
TRIM54-201ENST00000296098 SMIM9A6NGZ8 99 aa16.87■□□□□ 0.29
TRIM54-201ENST00000296098 TRBV20-1A0A075B6N2 111 aa16.87■□□□□ 0.29
TRIM54-201ENST00000296098 TRBV6-8A0A0A6YYG3 113 aa16.87■□□□□ 0.29
TRIM54-201ENST00000296098 GAGE6Q13070 117 aa16.86■□□□□ 0.29
TRIM54-201ENST00000296098 NOTCH2Q04721 2471 aa16.86■□□□□ 0.29
TRIM54-201ENST00000296098 TCL1BO95988 128 aa16.86■□□□□ 0.29
TRIM54-201ENST00000296098 F5H768 121 aa16.85■□□□□ 0.29
TRIM54-201ENST00000296098 ETDBQ3ZM63 59 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms