RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 GDF5OSQ5U4N7 250 aa6.1□□□□□ -1.43
PTPN3-201ENST00000262539 OPRPNQ99935 248 aaPredicted RBP6.1□□□□□ -1.43
PTPN3-201ENST00000262539 CITED1Q99966 193 aa6.1□□□□□ -1.43
PTPN3-201ENST00000262539 ANKRD17O75179 2603 aaKnown RBP6.1□□□□□ -1.43
PTPN3-201ENST00000262539 HRCT1Q6UXD1 115 aa6.1□□□□□ -1.43
PTPN3-201ENST00000262539 FAM19A5Q7Z5A7 132 aaPredicted RBP6.1□□□□□ -1.43
PTPN3-201ENST00000262539 Q8N1Y9 231 aa6.1□□□□□ -1.43
PTPN3-201ENST00000262539 MAJINQ3KP22 176 aa6.1□□□□□ -1.43
PTPN3-201ENST00000262539 ANKRD29Q8N6D5 301 aa6.1□□□□□ -1.43
PTPN3-201ENST00000262539 HELZ2Q9BYK8 2649 aaKnown RBP6.09□□□□□ -1.43
PTPN3-201ENST00000262539 TOMM6Q96B49 74 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 PRO0255Q9UI72 69 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 BEAN1Q3B7T3 259 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.09□□□□□ -1.43
PTPN3-201ENST00000262539 C2CD3Q4AC94 2353 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 HCFC1P51610 2035 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 SETD2Q9BYW2 2564 aaPredicted RBP6.09□□□□□ -1.43
PTPN3-201ENST00000262539 LYRM9A8MSI8 78 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 LINC00482Q8N8I6 264 aa6.09□□□□□ -1.43
PTPN3-201ENST00000262539 IFITM1P13164 125 aa6.09□□□□□ -1.44
PTPN3-201ENST00000262539 TRBV6-4A0A1B0GX49 114 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 PCP2Q8IVA1 136 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 BPTFQ12830 3046 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 NFE4Q86UQ8 179 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 CXCL5P42830 114 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 H3BQ85 93 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 ACYP1P07311 99 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 ODF1Q14990 250 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 RNF185Q96GF1 192 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 DSCAML1Q8TD84 2053 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 TRAV10A0A0B4J240 114 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 NUPR2A6NF83 97 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 RNASE3P12724 160 aaKnown RBP6.08□□□□□ -1.44
PTPN3-201ENST00000262539 LINC00310P59036 64 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 HIST2H2BDQ6DRA6 164 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 MSRB1Q9NZV6 116 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 LECT2O14960 151 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 FAM222AQ5U5X8 452 aa6.08□□□□□ -1.44
PTPN3-201ENST00000262539 K7ERJ3 54 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 NUPR1O60356 82 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 C11orf21Q9P2W6 132 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 DAND5Q8N907 189 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 C20orf173Q96LM9 149 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 LINC00269Q8N2A0 174 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 MUC7Q8TAX7 377 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 A0A0J9YXY3 114 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 COX7BP24311 80 aa6.07□□□□□ -1.44
PTPN3-201ENST00000262539 IGSF10Q6WRI0 2623 aa6.06□□□□□ -1.44
PTPN3-201ENST00000262539 ODF3L2Q3SX64 289 aa6.06□□□□□ -1.44
PTPN3-201ENST00000262539 DKK2Q9UBU2 259 aa6.06□□□□□ -1.44
PTPN3-201ENST00000262539 GATA1P15976 413 aaPredicted RBP6.06□□□□□ -1.44
PTPN3-201ENST00000262539 C11orf86A6NJI1 115 aa6.06□□□□□ -1.44
PTPN3-201ENST00000262539 UBE2D2P62837 147 aa6.06□□□□□ -1.44
PTPN3-201ENST00000262539 CHCHD7Q9BUK0 85 aa6.06□□□□□ -1.44
PTPN3-201ENST00000262539 REG3AQ06141 175 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 NRACQ8N912 160 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 E9PLD3 99 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 M0QY20 66 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 PPDPFLQ8WWR9 84 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 MDFICQ9P1T7 246 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 MIFP14174 115 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 MRPS36P82909 103 aaKnown RBP6.05□□□□□ -1.44
PTPN3-201ENST00000262539 LINC01620Q4KN68 170 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 SPINK6Q6UWN8 80 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 DEFB1P60022 68 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 KIF25-AS1Q9Y6Z4 181 aa6.05□□□□□ -1.44
PTPN3-201ENST00000262539 RETNQ9HD89 108 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 CSDC2Q9Y534 153 aaKnown RBP6.04□□□□□ -1.44
PTPN3-201ENST00000262539 TRBV10-2A0A0K0K1G8 114 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 FRMD6-AS1P0C7T7 363 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 P0DMU3 169 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 FAM231AP0DMU4 169 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 FAM231CP0DMU5 169 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 MUSTN1Q8IVN3 82 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 HECTD1Q9ULT8 2610 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 K7ERS5 55 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 FOXI1Q12951 378 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 IGKV2D-26A0A0A0MRZ7 120 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 Q6ZS46 218 aa6.04□□□□□ -1.44
PTPN3-201ENST00000262539 ACANP16112 2415 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 IGKV3D-7A0A0C4DH55 119 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 H0YGX0 51 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 FAM236DA0A1B0GTK5 79 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 CFC1BP0CG36 223 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 CFC1P0CG37 223 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 FAM236CP0DP71 79 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 C9orf118A6NHY6 69 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 UPK3BQ9BT76 320 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 TP73-AS1Q9UF72 201 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 PPDPFQ9H3Y8 114 aa6.03□□□□□ -1.44
PTPN3-201ENST00000262539 ZNF706Q9Y5V0 76 aaPredicted RBP6.03□□□□□ -1.44
PTPN3-201ENST00000262539 A0A0J9YXV3 536 aa6.02□□□□□ -1.44
PTPN3-201ENST00000262539 RPL39P62891 51 aaKnown RBP6.02□□□□□ -1.45
PTPN3-201ENST00000262539 PRR9Q5T870 116 aa6.02□□□□□ -1.45
PTPN3-201ENST00000262539 NEXN-AS1Q8NBZ9 246 aa6.02□□□□□ -1.45
PTPN3-201ENST00000262539 KRTAP1-3Q8IUG1 177 aa6.02□□□□□ -1.45
PTPN3-201ENST00000262539 NTN5Q8WTR8 489 aaPredicted RBP6.02□□□□□ -1.45
PTPN3-201ENST00000262539 BRCA2P51587 3418 aa6.02□□□□□ -1.45
PTPN3-201ENST00000262539 URB1-AS1Q96HZ7 61 aa6.02□□□□□ -1.45
PTPN3-201ENST00000262539 IGLV9-49A0A0B4J1Y8 123 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 78.2 ms