RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	UFO1	Q04511	668 aa		5.82	□□□□□ -1.48
RRP40	YOL142W	RIM15	P43565	1770 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	RPN13	O13563	156 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	SPO11	P23179	398 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	YMC2	P38087	329 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	YBR071W	P38243	211 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	PMT6	P42934	759 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	YJR120W	P47157	116 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	NGL1	Q08213	363 aa	Known RBP	5.81	□□□□□ -1.48
RRP40	YOL142W	SNF2	P22082	1703 aa		5.81	□□□□□ -1.48
RRP40	YOL142W	MHP1	P43638	1398 aa		5.8	□□□□□ -1.48
RRP40	YOL142W	TUB1	P09733	447 aa	Known RBP	5.8	□□□□□ -1.48
RRP40	YOL142W	RIX1	P38883	763 aa	Predicted RBP	5.8	□□□□□ -1.48
RRP40	YOL142W	ATF1	P40353	525 aa		5.8	□□□□□ -1.48
RRP40	YOL142W	PHO5	P00635	467 aa		5.79	□□□□□ -1.48
RRP40	YOL142W	YGR054W	P53235	642 aa	Known RBP	5.79	□□□□□ -1.48
RRP40	YOL142W	YDR179W-A	Q03983	463 aa		5.79	□□□□□ -1.48
RRP40	YOL142W	ARO10	Q06408	635 aa		5.79	□□□□□ -1.48
RRP40	YOL142W	YCG1	Q06680	1035 aa		5.79	□□□□□ -1.48
RRP40	YOL142W	HMG2	P12684	1045 aa		5.78	□□□□□ -1.48
RRP40	YOL142W	CUE2	P36075	443 aa	Known RBP	5.78	□□□□□ -1.48
RRP40	YOL142W	FLO10	P36170	1169 aa		5.78	□□□□□ -1.48
RRP40	YOL142W	PPE1	P38796	400 aa		5.78	□□□□□ -1.48
RRP40	YOL142W	YDL183C	P48569	320 aa		5.78	□□□□□ -1.48
RRP40	YOL142W	COG6	P53959	839 aa		5.78	□□□□□ -1.48
RRP40	YOL142W	AIM41	Q12032	185 aa		5.78	□□□□□ -1.48
RRP40	YOL142W	STE12	P13574	688 aa		5.77	□□□□□ -1.49
RRP40	YOL142W	STE4	P18851	423 aa		5.77	□□□□□ -1.49
RRP40	YOL142W	ILV6	P25605	309 aa	Known RBP	5.77	□□□□□ -1.49
RRP40	YOL142W	MRPL7	P36519	292 aa		5.77	□□□□□ -1.49
RRP40	YOL142W	EHT1	P38295	451 aa		5.77	□□□□□ -1.49
RRP40	YOL142W	SRP68	P38687	599 aa	Known RBP	5.77	□□□□□ -1.49
RRP40	YOL142W	PEA2	P40091	420 aa		5.77	□□□□□ -1.49
RRP40	YOL142W	SPC105	P53148	917 aa		5.77	□□□□□ -1.49
RRP40	YOL142W	DAK1	P54838	584 aa	Known RBP	5.77	□□□□□ -1.49
RRP40	YOL142W	NGL2	Q03264	515 aa	Known RBP	5.77	□□□□□ -1.49
RRP40	YOL142W	MDM20	Q12387	796 aa	Known RBP	5.77	□□□□□ -1.49
RRP40	YOL142W	COX11	P19516	300 aa	Known RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	PEX2	P32800	271 aa		5.76	□□□□□ -1.49
RRP40	YOL142W	RMA1	P36001	430 aa	Known RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	ENP1	P38333	483 aa	Known RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	PMC1	P38929	1173 aa	Predicted RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	IRC5	P43610	853 aa		5.76	□□□□□ -1.49
RRP40	YOL142W	ASN1	P49089	572 aa	Known RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	MRK1	P50873	501 aa		5.76	□□□□□ -1.49
RRP40	YOL142W	EFR3	Q03653	782 aa	Known RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	CEF1	Q03654	590 aa	Predicted RBP	5.76	□□□□□ -1.49
RRP40	YOL142W	LEU2	P04173	364 aa	Predicted RBP	5.75	□□□□□ -1.49
RRP40	YOL142W	YEL076C-A	P0CX16	216 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	YLR464W	P0CX17	216 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	HEM12	P32347	362 aa	Predicted RBP	5.75	□□□□□ -1.49
RRP40	YOL142W	PAC2	P39937	518 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	YEL076C	P39971	216 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	THI6	P41835	540 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	SLD3	P53135	668 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	LGE1	Q02796	332 aa	Known RBP	5.75	□□□□□ -1.49
RRP40	YOL142W	TRS23	Q03784	219 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	ENT1	Q12518	454 aa		5.75	□□□□□ -1.49
RRP40	YOL142W	TPK2	P06245	380 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	SSB1	P11484	613 aa	Known RBP	5.74	□□□□□ -1.49
RRP40	YOL142W	PRP45	P28004	379 aa	Predicted RBP	5.74	□□□□□ -1.49
RRP40	YOL142W	YPT53	P36019	220 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	YEL025C	P39991	1188 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	SSB2	P40150	613 aa	Known RBP	5.74	□□□□□ -1.49
RRP40	YOL142W	PEF1	P53238	335 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	SQS1	P53866	767 aa	Known RBP	5.74	□□□□□ -1.49
RRP40	YOL142W	MFM1	Q02783	413 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	ARR3	Q06598	404 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	NDJ1	Q12366	352 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	AUS1	Q08409	1394 aa		5.74	□□□□□ -1.49
RRP40	YOL142W	RSF2	P46974	1380 aa		5.73	□□□□□ -1.49
RRP40	YOL142W	RPA135	P22138	1203 aa	Known RBP	5.73	□□□□□ -1.49
RRP40	YOL142W	SAT4	P25333	603 aa	Known RBP	5.73	□□□□□ -1.49
RRP40	YOL142W	MRC1	P25588	1096 aa		5.73	□□□□□ -1.49
RRP40	YOL142W	DHR2	P36009	735 aa	Predicted RBP	5.73	□□□□□ -1.49
RRP40	YOL142W	LRO1	P40345	661 aa		5.73	□□□□□ -1.49
RRP40	YOL142W	YIP4	P53093	235 aa		5.73	□□□□□ -1.49
RRP40	YOL142W	ECM38	Q05902	660 aa	Predicted RBP	5.73	□□□□□ -1.49
RRP40	YOL142W	YOR378W	Q08902	515 aa		5.73	□□□□□ -1.49
RRP40	YOL142W	CWC2	Q12046	339 aa	Predicted RBP	5.73	□□□□□ -1.49
RRP40	YOL142W	RPS24A	P0CX31	135 aa	Known RBP	5.72	□□□□□ -1.49
RRP40	YOL142W	RPS24B	P0CX32	135 aa	Known RBP	5.72	□□□□□ -1.49
RRP40	YOL142W	PLC1	P32383	869 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	TFC4	P33339	1025 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	EAF5	P39995	279 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	EMP65	P40085	556 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	IMO32	P53219	342 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	FOL1	P53848	824 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	MTD1	Q02046	320 aa	Known RBP	5.72	□□□□□ -1.49
RRP40	YOL142W	PEX15	Q08215	383 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	VPS5	Q92331	675 aa		5.72	□□□□□ -1.49
RRP40	YOL142W	TUF1	P02992	437 aa	Known RBP	5.71	□□□□□ -1.5
RRP40	YOL142W	KAR1	P11927	433 aa		5.71	□□□□□ -1.5
RRP40	YOL142W	HOP1	P20050	605 aa		5.71	□□□□□ -1.5
RRP40	YOL142W	UGP1	P32861	499 aa	Known RBP	5.71	□□□□□ -1.5
RRP40	YOL142W	PEX14	P53112	341 aa		5.71	□□□□□ -1.5
RRP40	YOL142W	YGL117W	P53133	265 aa		5.71	□□□□□ -1.5
RRP40	YOL142W	YML122C	Q03207	126 aa		5.71	□□□□□ -1.5
RRP40	YOL142W	PDS5	Q04264	1277 aa		5.71	□□□□□ -1.5
RRP40	YOL142W	IMH1	Q06704	911 aa	Known RBP	5.71	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 18.9 ms