RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W RIM4P38741 713 aa6.41□□□□□ -1.38
CAF40YNL288W PEX28P38848 579 aa6.41□□□□□ -1.38
CAF40YNL288W MOB1P40484 314 aa6.41□□□□□ -1.38
CAF40YNL288W MAF1P41910 395 aa6.41□□□□□ -1.38
CAF40YNL288W GUF1P46943 645 aa6.41□□□□□ -1.38
CAF40YNL288W YMR018WQ04364 514 aa6.41□□□□□ -1.38
CAF40YNL288W VPS54Q12071 889 aa6.41□□□□□ -1.38
CAF40YNL288W DAS2Q12084 232 aa6.41□□□□□ -1.38
CAF40YNL288W AEP2P22136 580 aa6.4□□□□□ -1.38
CAF40YNL288W VMA4P22203 233 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W PEX1P24004 1043 aa6.4□□□□□ -1.38
CAF40YNL288W SLD2P34252 453 aa6.4□□□□□ -1.38
CAF40YNL288W TSA1P34760 196 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W BLI1P35727 113 aa6.4□□□□□ -1.38
CAF40YNL288W CBR1P38626 284 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W YMR124WP39523 943 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W SPC72P39723 622 aa6.4□□□□□ -1.38
CAF40YNL288W YEL075CP39972 122 aa6.4□□□□□ -1.38
CAF40YNL288W RPT2P40327 437 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W SLG1P54867 378 aa6.4□□□□□ -1.38
CAF40YNL288W MSH6Q03834 1242 aa6.4□□□□□ -1.38
CAF40YNL288W SXM1Q04175 944 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W YDR222WQ04925 415 aa6.4□□□□□ -1.38
CAF40YNL288W DIS3Q08162 1001 aaKnown RBP6.4□□□□□ -1.38
CAF40YNL288W CIR2Q08822 631 aa6.4□□□□□ -1.38
CAF40YNL288W BI2P03873 423 aa6.39□□□□□ -1.39
CAF40YNL288W BI4P03879 638 aa6.39□□□□□ -1.39
CAF40YNL288W GFA1P14742 717 aaKnown RBP6.39□□□□□ -1.39
CAF40YNL288W APE1P14904 514 aa6.39□□□□□ -1.39
CAF40YNL288W NPR1P22211 790 aa6.39□□□□□ -1.39
CAF40YNL288W PDE1P22434 369 aa6.39□□□□□ -1.39
CAF40YNL288W RAD57P25301 460 aa6.39□□□□□ -1.39
CAF40YNL288W DSS4P32601 143 aa6.39□□□□□ -1.39
CAF40YNL288W GYP6P32806 458 aa6.39□□□□□ -1.39
CAF40YNL288W YKR051WP36142 418 aa6.39□□□□□ -1.39
CAF40YNL288W ABZ1P37254 787 aaPredicted RBP6.39□□□□□ -1.39
CAF40YNL288W RIM11P38615 370 aa6.39□□□□□ -1.39
CAF40YNL288W QNS1P38795 714 aaKnown RBP6.39□□□□□ -1.39
CAF40YNL288W YHR131CP38835 850 aa6.39□□□□□ -1.39
CAF40YNL288W SET5P38890 526 aaKnown RBP6.39□□□□□ -1.39
CAF40YNL288W FHL1P39521 936 aa6.39□□□□□ -1.39
CAF40YNL288W BTT1P40314 149 aaPredicted RBP6.39□□□□□ -1.39
CAF40YNL288W EFM4P40516 257 aa6.39□□□□□ -1.39
CAF40YNL288W SNZ3P43545 298 aa6.39□□□□□ -1.39
CAF40YNL288W OSW7P43611 510 aa6.39□□□□□ -1.39
CAF40YNL288W PFD1P46988 109 aa6.39□□□□□ -1.39
CAF40YNL288W PSP1P50896 841 aaKnown RBP6.39□□□□□ -1.39
CAF40YNL288W SNZ2P53824 298 aa6.39□□□□□ -1.39
CAF40YNL288W JJJ1P53863 590 aa6.39□□□□□ -1.39
CAF40YNL288W CEG1Q01159 459 aaPredicted RBP6.39□□□□□ -1.39
CAF40YNL288W TAF9Q05027 157 aa6.39□□□□□ -1.39
CAF40YNL288W DDC1Q08949 612 aa6.39□□□□□ -1.39
CAF40YNL288W DAP1Q12091 152 aa6.39□□□□□ -1.39
CAF40YNL288W CMR1Q12510 522 aaKnown RBP6.39□□□□□ -1.39
CAF40YNL288W BI3Q9ZZW7 517 aa6.39□□□□□ -1.39
CAF40YNL288W YMR084WA2P2R3 262 aa6.38□□□□□ -1.39
CAF40YNL288W ADE3P07245 946 aaKnown RBP6.38□□□□□ -1.39
CAF40YNL288W PUT4P15380 627 aa6.38□□□□□ -1.39
CAF40YNL288W EST1P17214 699 aaPredicted RBP6.38□□□□□ -1.39
CAF40YNL288W SEC1P30619 724 aaKnown RBP6.38□□□□□ -1.39
CAF40YNL288W ABD1P32783 436 aaPredicted RBP6.38□□□□□ -1.39
CAF40YNL288W YBR056WP38081 501 aa6.38□□□□□ -1.39
CAF40YNL288W PCH2P38126 564 aa6.38□□□□□ -1.39
CAF40YNL288W SIF2P38262 535 aa6.38□□□□□ -1.39
CAF40YNL288W HIS2P38635 335 aa6.38□□□□□ -1.39
CAF40YNL288W TCD1P38756 429 aa6.38□□□□□ -1.39
CAF40YNL288W SFB3P38810 929 aa6.38□□□□□ -1.39
CAF40YNL288W STU2P46675 888 aa6.38□□□□□ -1.39
CAF40YNL288W ASG7P46993 209 aa6.38□□□□□ -1.39
CAF40YNL288W MTD1Q02046 320 aaKnown RBP6.38□□□□□ -1.39
CAF40YNL288W HER2Q03557 464 aa6.38□□□□□ -1.39
CAF40YNL288W NSE5Q03718 556 aa6.38□□□□□ -1.39
CAF40YNL288W SOV1Q04748 898 aa6.38□□□□□ -1.39
CAF40YNL288W PMT7Q06644 662 aa6.38□□□□□ -1.39
CAF40YNL288W RCL1Q08096 367 aaPredicted RBP6.38□□□□□ -1.39
CAF40YNL288W AIM39Q08223 395 aa6.38□□□□□ -1.39
CAF40YNL288W VPS5Q92331 675 aa6.38□□□□□ -1.39
CAF40YNL288W MTF1P14908 341 aaKnown RBP6.37□□□□□ -1.39
CAF40YNL288W KAR3P17119 729 aa6.37□□□□□ -1.39
CAF40YNL288W ERS1P17261 260 aa6.37□□□□□ -1.39
CAF40YNL288W CKI1P20485 582 aa6.37□□□□□ -1.39
CAF40YNL288W RAD16P31244 790 aa6.37□□□□□ -1.39
CAF40YNL288W DBF4P32325 704 aa6.37□□□□□ -1.39
CAF40YNL288W SRB4P32569 687 aa6.37□□□□□ -1.39
CAF40YNL288W HSP78P33416 811 aa6.37□□□□□ -1.39
CAF40YNL288W MFT1P33441 392 aaKnown RBP6.37□□□□□ -1.39
CAF40YNL288W SRB2P34162 210 aa6.37□□□□□ -1.39
CAF40YNL288W SEG2P34250 1132 aa6.37□□□□□ -1.39
CAF40YNL288W PPX1P38698 397 aa6.37□□□□□ -1.39
CAF40YNL288W PMC1P38929 1173 aaPredicted RBP6.37□□□□□ -1.39
CAF40YNL288W LYS9P38999 446 aa6.37□□□□□ -1.39
CAF40YNL288W CAJ1P39101 391 aa6.37□□□□□ -1.39
CAF40YNL288W KAP114P53067 1004 aa6.37□□□□□ -1.39
CAF40YNL288W UTP8P53276 713 aaKnown RBP6.37□□□□□ -1.39
CAF40YNL288W LEE1Q02799 301 aaKnown RBP6.37□□□□□ -1.39
CAF40YNL288W ATG16Q03818 150 aa6.37□□□□□ -1.39
CAF40YNL288W HRD3Q05787 833 aa6.37□□□□□ -1.39
CAF40YNL288W ECM22Q05958 814 aaPredicted RBP6.37□□□□□ -1.39
CAF40YNL288W PUF3Q07807 879 aaKnown RBP RIP-Chip data6.37□□□□□ -1.39not detected
CAF40YNL288W YOR059CQ08448 450 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms