RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YIL024CP40543 189 aa0.77□□□□□ -2.29
NIP1YMR309C TDA10P42938 290 aa0.77□□□□□ -2.29
NIP1YMR309C GZF3P42944 551 aaKnown RBP0.77□□□□□ -2.29
NIP1YMR309C YFL015CP43578 164 aa0.77□□□□□ -2.29
NIP1YMR309C PMT3P47190 753 aa0.77□□□□□ -2.29
NIP1YMR309C LYS20P48570 428 aaKnown RBP0.77□□□□□ -2.29
NIP1YMR309C RNR4P49723 345 aaKnown RBP0.77□□□□□ -2.29
NIP1YMR309C COP1P53622 1201 aaKnown RBP0.77□□□□□ -2.29
NIP1YMR309C RPL15BP54780 204 aaPredicted RBP0.77□□□□□ -2.29
NIP1YMR309C YTM1Q12024 460 aaPredicted RBP0.77□□□□□ -2.29
NIP1YMR309C FAP7Q12055 197 aaPredicted RBP0.77□□□□□ -2.29
NIP1YMR309C AIM44Q99299 758 aa0.77□□□□□ -2.29
NIP1YMR309C HMG2P12684 1045 aa0.77□□□□□ -2.29
NIP1YMR309C YPK1P12688 680 aaKnown RBP0.77□□□□□ -2.29
NIP1YMR309C OAF3P36023 863 aa0.77□□□□□ -2.29
NIP1YMR309C ARC40P38328 384 aaKnown RBP0.77□□□□□ -2.29
NIP1YMR309C FLO5P38894 1075 aa0.77□□□□□ -2.29
NIP1YMR309C YIL152WP40455 235 aa0.77□□□□□ -2.29
NIP1YMR309C YIR016WP40572 265 aa0.77□□□□□ -2.29
NIP1YMR309C SAE2P46946 345 aa0.77□□□□□ -2.29
NIP1YMR309C DNM1P54861 757 aa0.77□□□□□ -2.29
NIP1YMR309C UME1Q03010 460 aa0.77□□□□□ -2.29
NIP1YMR309C MTQ2Q03920 221 aaPredicted RBP0.77□□□□□ -2.29
NIP1YMR309C GRS2Q06817 618 aa0.77□□□□□ -2.29
NIP1YMR309C SNA4Q07549 140 aa0.77□□□□□ -2.29
NIP1YMR309C YGR161W-CQ3E744 92 aa0.77□□□□□ -2.29
NIP1YMR309C TUF1P02992 437 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C HOP1P20050 605 aa0.76□□□□□ -2.29
NIP1YMR309C VPS33P20795 691 aa0.76□□□□□ -2.29
NIP1YMR309C DSS4P32601 143 aa0.76□□□□□ -2.29
NIP1YMR309C FAT1P38225 669 aa0.76□□□□□ -2.29
NIP1YMR309C LRO1P40345 661 aa0.76□□□□□ -2.29
NIP1YMR309C IES1P43579 692 aa0.76□□□□□ -2.29
NIP1YMR309C MNN11P46985 422 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C SAP4P53036 818 aa0.76□□□□□ -2.29
NIP1YMR309C RPS15Q01855 142 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C ECM9Q02202 377 aa0.76□□□□□ -2.29
NIP1YMR309C RTT103Q05543 409 aa0.76□□□□□ -2.29
NIP1YMR309C CRT10Q08226 957 aa0.76□□□□□ -2.29
NIP1YMR309C YPR027CQ12079 277 aa0.76□□□□□ -2.29
NIP1YMR309C ILS1P09436 1072 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C RPS21AP0C0V8 87 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C ACO1P19414 778 aaKnown RBP RIP-Chip data0.76□□□□□ -2.29not detected
NIP1YMR309C CDS1P38221 457 aa0.76□□□□□ -2.29
NIP1YMR309C HXT6P39003 570 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C HXT7P39004 570 aa0.76□□□□□ -2.29
NIP1YMR309C SKP2P42843 763 aa0.76□□□□□ -2.29
NIP1YMR309C IRC7P43623 340 aa0.76□□□□□ -2.29
NIP1YMR309C MDV1P47025 714 aa0.76□□□□□ -2.29
NIP1YMR309C YGR237CP50089 785 aa0.76□□□□□ -2.29
NIP1YMR309C YGL260WP53056 76 aa0.76□□□□□ -2.29
NIP1YMR309C COG2P53271 262 aa0.76□□□□□ -2.29
NIP1YMR309C YNL058CP53947 316 aa0.76□□□□□ -2.29
NIP1YMR309C BOP3P53958 396 aa0.76□□□□□ -2.29
NIP1YMR309C MTD1Q02046 320 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C NGL1Q08213 363 aaKnown RBP0.76□□□□□ -2.29
NIP1YMR309C HFI1Q12060 488 aa0.76□□□□□ -2.29
NIP1YMR309C HOS1Q12214 470 aa0.76□□□□□ -2.29
NIP1YMR309C RMP1Q12530 201 aa0.76□□□□□ -2.29
NIP1YMR309C AAC1P04710 309 aa0.75□□□□□ -2.29
NIP1YMR309C YCR043CP25361 127 aa0.75□□□□□ -2.29
NIP1YMR309C YJU2P28320 278 aaPredicted RBP0.75□□□□□ -2.29
NIP1YMR309C HXT4P32467 576 aa0.75□□□□□ -2.29
NIP1YMR309C RMA1P36001 430 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C YPT10P38146 199 aa0.75□□□□□ -2.29
NIP1YMR309C NMD2P38798 1089 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C RRP8P38961 392 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C LAS21P40367 830 aa0.75□□□□□ -2.29
NIP1YMR309C TES1P41903 349 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C SNU56Q03782 492 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C HRD3Q05787 833 aa0.75□□□□□ -2.29
NIP1YMR309C CYK3Q07533 885 aa0.75□□□□□ -2.29
NIP1YMR309C NRT1Q08485 598 aa0.75□□□□□ -2.29
NIP1YMR309C PCL8Q08966 492 aa0.75□□□□□ -2.29
NIP1YMR309C PUF2Q12221 1075 aaKnown RBP RIP-Chip data0.75□□□□□ -2.29not detected
NIP1YMR309C UBX3Q12229 455 aa0.75□□□□□ -2.29
NIP1YMR309C CET1O13297 549 aaPredicted RBP0.75□□□□□ -2.29
NIP1YMR309C COQ3P27680 312 aa0.75□□□□□ -2.29
NIP1YMR309C GDA1P32621 518 aa0.75□□□□□ -2.29
NIP1YMR309C RPT3P33298 428 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C TOM71P38825 639 aaKnown RBP0.75□□□□□ -2.29
NIP1YMR309C RAD26P40352 1085 aa0.75□□□□□ -2.29
NIP1YMR309C CIR1P42940 261 aa0.75□□□□□ -2.29
NIP1YMR309C IDS2P46958 469 aa0.75□□□□□ -2.29
NIP1YMR309C SPC105P53148 917 aa0.75□□□□□ -2.29
NIP1YMR309C HOL1P53389 586 aa0.75□□□□□ -2.29
NIP1YMR309C YNL144CP53907 740 aa0.75□□□□□ -2.29
NIP1YMR309C USA1Q03714 838 aa0.75□□□□□ -2.29
NIP1YMR309C YMR317WQ04893 1140 aa0.75□□□□□ -2.29
NIP1YMR309C YML053CQ04978 212 aa0.75□□□□□ -2.29
NIP1YMR309C ARR3Q06598 404 aa0.75□□□□□ -2.29
NIP1YMR309C ATX2Q12067 313 aa0.75□□□□□ -2.29
NIP1YMR309C VPS5Q92331 675 aa0.75□□□□□ -2.29
NIP1YMR309C APM4Q99186 491 aa0.75□□□□□ -2.29
NIP1YMR309C CTT1P06115 562 aa0.74□□□□□ -2.29
NIP1YMR309C ILV2P07342 687 aaKnown RBP0.74□□□□□ -2.29
NIP1YMR309C CDC26P14724 124 aa0.74□□□□□ -2.29
NIP1YMR309C CBP3P21560 335 aa0.74□□□□□ -2.29
NIP1YMR309C MF(ALPHA)2P32435 120 aa0.74□□□□□ -2.29
NIP1YMR309C SIP1P32578 815 aa0.74□□□□□ -2.29
Retrieved 100 of 5,963 RNA–protein pairs in 13.1 ms