RNA–Protein interactions for RNA: YMR247C

RKR1, Transcript of RING domain E3 ubiquitin ligase, yeast

Gene RKR1, Length 4,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RKR1	YMR247C	YPL068C	Q02749	293 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	GIR2	Q03768	265 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	RSF1	Q05043	376 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	LCB4	Q12246	624 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	HSP42	Q12329	375 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	HMG2	P12684	1045 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	LRE1	P25579	583 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	PTP2	P29461	750 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	MVD1	P32377	396 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	CDS1	P38221	457 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	YHR112C	P38716	378 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	OAF1	P39720	1047 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	KHA1	P40309	873 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	PKP1	P40530	394 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	IRC5	P43610	853 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	TAF1	P46677	1066 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	GLO1	P50107	326 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	UBC9	P50623	157 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	SAP4	P53036	818 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	RRN11	Q04712	507 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	ESC2	Q06340	456 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	VAM6	Q07468	1049 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	IWR1	Q07532	353 aa	Predicted RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	CYK3	Q07533	885 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	ATX2	Q12067	313 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	MDM20	Q12387	796 aa	Known RBP	0.98	□□□□□ -2.25
RKR1	YMR247C	YLR149C	Q99296	730 aa		0.98	□□□□□ -2.25
RKR1	YMR247C	LPD1	P09624	499 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	THR1	P17423	357 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	SIR1	P21691	654 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	YCR061W	P25639	631 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	PUP2	P32379	260 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	GSH1	P32477	678 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	CDC5	P32562	705 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TGL1	P34163	548 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	MIC60	P36112	540 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	AGP2	P38090	596 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TDP1	P38319	544 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	DIA4	P38705	446 aa	Predicted RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	MTG2	P38860	518 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	PRM2	P40534	656 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	VID28	P40547	921 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	IDS2	P46958	469 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	NMD5	P46970	1048 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	VPS4	P52917	437 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	YGL117W	P53133	265 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	YGR054W	P53235	642 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	SUN4	P53616	420 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	MAK10	Q02197	733 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	ATG21	Q02887	496 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	PHM6	Q05637	104 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	MRI1	Q06489	411 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	GPN2	Q08726	347 aa	Predicted RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	LYS21	Q12122	440 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	DCS2	Q12123	353 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	RUP1	Q12242	671 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	ICT1	Q12385	394 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	RPS9B	P05755	195 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	RAD18	P10862	487 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	HOM2	P13663	365 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	MCM3	P24279	971 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	FEN2	P25621	512 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	MSS51	P32335	436 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	HEM12	P32347	362 aa	Predicted RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	PDB1	P32473	366 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	GRX4	P32642	244 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	BCS1	P32839	456 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	REC114	P32841	428 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	HIS7	P33734	552 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	TOM20	P35180	183 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	MTH1	P35198	433 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TYS1	P36421	394 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	YMC2	P38087	329 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	MUM2	P38236	366 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	GPP2	P40106	250 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	FKH2	P41813	862 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	GSM1	P42950	618 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	BST1	P43571	1029 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	UBX6	P47049	396 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	ORC5	P50874	479 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	MET13	P53128	600 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	VPS9	P54787	451 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	FIN1	Q03898	291 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	YDR179W-A	Q03983	463 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	BUD22	Q04347	519 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	ECM38	Q05902	660 aa	Predicted RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	YOR022C	Q12204	715 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-LR1	P0C2J3	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-F	P0CX63	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-GR2	P0CX64	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-C	P25384	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-DR2	Q03494	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY1B-DR1	Q03855	1755 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-DR3	Q07791	1770 aa	Known RBP	0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-OR1	Q12113	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-DR1	Q12472	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-B	Q12491	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY2B-OR2	Q12501	1770 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	TY1B-DR3	Q99231	1755 aa		0.97	□□□□□ -2.25
RKR1	YMR247C	VAS1	P07806	1104 aa	Known RBP	0.97	□□□□□ -2.25

Retrieved 100 of 5,963 RNA–protein pairs in 90.2 ms