RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	STE12	P13574	688 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	YHR097C	P38809	366 aa	Known RBP	4.58	□□□□□ -1.68
CDC9	YDL164C	GDI1	P39958	451 aa	Known RBP	4.58	□□□□□ -1.68
CDC9	YDL164C	GID8	P40208	455 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	ARF3	P40994	183 aa	RIP-Chip data	4.58	□□□□□ -1.68	not detected
CDC9	YDL164C	AGX1	P43567	385 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	AIP1	P46680	615 aa	Known RBP	4.58	□□□□□ -1.68
CDC9	YDL164C	COG1	P53079	417 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	PEF1	P53238	335 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	INN1	P53901	409 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	CIK1	Q01649	594 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	RSB1	Q08417	382 aa		4.58	□□□□□ -1.68
CDC9	YDL164C	ARG82	P07250	355 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	CBS1	P14066	229 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	RRP43	P25359	394 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	HSM3	P38348	480 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	SET5	P38890	526 aa	Known RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	ZIM17	P42844	174 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	ARC1	P46672	376 aa	Known RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	NUP85	P46673	744 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	RPN14	P53196	417 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	YKR011C	Q02209	353 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	APC5	Q08683	685 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	OM45	P16547	393 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	CWH43	P25618	953 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	SUR1	P33300	382 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	CCT6	P39079	546 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	FLC2	P39719	783 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	SEC9	P40357	651 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	MET28	P40573	187 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	SOK2	P53438	785 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	HST1	P53685	503 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	GPD1	Q00055	391 aa	Known RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	RPA49	Q01080	415 aa	Predicted RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	NGL2	Q03264	515 aa	Known RBP	4.57	□□□□□ -1.68
CDC9	YDL164C	YAP6	Q03935	383 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	STP3	Q05937	343 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	ARV1	Q06541	321 aa		4.57	□□□□□ -1.68
CDC9	YDL164C	TEF4	P36008	412 aa	Known RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	ECM21	P38167	1117 aa	Known RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	YSW1	P38280	609 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	SHR5	P41912	237 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	CSL4	P53859	292 aa	Predicted RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	DON1	Q05610	365 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	ADY4	Q05955	493 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	VAM6	Q07468	1049 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	CHS5	Q12114	671 aa	Known RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	RPN5	Q12250	445 aa	Known RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	PHM7	Q12252	991 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	SFI1	Q12369	946 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-LR1	P0C2J4	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-F	P0CX61	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-GR2	P0CX62	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	LAT1	P12695	482 aa	Known RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	ADE2	P21264	571 aa	Known RBP	4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-C	P25383	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	PRE4	P30657	266 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	SMI1	P32566	505 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	YSC84	P32793	468 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	MUP3	P38734	546 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	RGI2	P40188	164 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	UBP7	P40453	1071 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TOF2	Q02208	771 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	FCP1	Q03254	732 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-DR2	Q03483	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	RBA50	Q04418	439 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TRI1	Q05024	226 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	YPR172W	Q06608	200 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	MRN1	Q08925	612 aa	Known RBP RIP-Chip data	4.56	□□□□□ -1.68	not detected
CDC9	YDL164C	TY2A-B	Q12260	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-OR2	Q12293	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-DR1	Q12392	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-OR1	Q12439	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	YBR126W-A	Q8TGU7	68 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	TY2A-DR3	Q99303	438 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	VCX1	Q99385	411 aa		4.56	□□□□□ -1.68
CDC9	YDL164C	ARO3	P14843	370 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	YME1	P32795	747 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	MEF2	P39677	819 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	SSP120	P39931	234 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	LCL3	P53153	274 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	MNP1	P53163	194 aa	Predicted RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	ART5	P53244	586 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	YGR266W	P53326	701 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	SPO1	P53541	631 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	RPT6	Q01939	405 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	TY1A-DR2	Q03964	440 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	MLH2	Q07980	695 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	YLL054C	Q12244	843 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	RIB2	Q12362	591 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	PRC1	P00729	532 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	ERG8	P24521	451 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	NIP1	P32497	812 aa	Known RBP	4.55	□□□□□ -1.68
CDC9	YDL164C	YHR131C	P38835	850 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	YNL195C	P40168	261 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	GSM1	P42950	618 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	REG1	Q00816	1014 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	ABZ2	Q03266	374 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	ROY1	Q04847	553 aa		4.55	□□□□□ -1.68
CDC9	YDL164C	RGC1	Q06108	1083 aa	Known RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 24.3 ms