RNA–Protein interactions for RNA: ENST00000640091.1

NECAP1-223, Transcript of NECAP endocytosis associated 1, human

TSL 2

Gene NECAP1, Length 2,115 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NECAP1-223	ENST00000640091	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	ZSWIM5	Q9P217	1185 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	MKRN1	Q9UHC7	482 aa	Known RBP	12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	KDM4A	O75164	1064 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	PRDM1	O75626	825 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	DDIT3	P35638	169 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	RBM5	P52756	815 aa	Known RBP eCLIP	12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	APOBR	Q0VD83	1088 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	CCDC83	Q8IWF9	413 aa		12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	SAP30BP	Q9UHR5	308 aa	Known RBP	12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	ZBTB12	Q9Y330	459 aa	Predicted RBP	12.37	□□□□□ -0.43
NECAP1-223	ENST00000640091	SCN9A	Q15858	1988 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	COL4A5	P29400	1685 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	PSMD14	O00487	310 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	CRK	P46108	304 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	APOBEC3H	Q6NTF7	200 aa	Known RBP	12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	STAG1	Q8WVM7	1258 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	TEKT1	Q969V4	418 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	NAP1L2	Q9ULW6	460 aa	Predicted RBP	12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	MYH2	Q9UKX2	1941 aa		12.36	□□□□□ -0.43
NECAP1-223	ENST00000640091	ST3GAL1	Q11201	340 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	PICALM	Q13492	652 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	HHIPL2	Q6UWX4	724 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	NIM1K	Q8IY84	436 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	ZSCAN31	Q96LW9	406 aa	Predicted RBP	12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	ZKSCAN3	Q9BRR0	538 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	USP40	Q9NVE5	1235 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	ANAPC4	Q9UJX5	808 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	ZNRF3	Q9ULT6	936 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	PLCD1	P51178	756 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	FKBP1A	P62942	108 aa	Known RBP	12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	RASSF7	Q02833	373 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	JDP2	Q8WYK2	163 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	AGXT2	Q9BYV1	514 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	VPS33B	Q9H267	617 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	CHMP5	Q9NZZ3	219 aa		12.35	□□□□□ -0.43
NECAP1-223	ENST00000640091	PLCG2	P16885	1265 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	PRELP	P51888	382 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	CDC42EP5	Q6NZY7	148 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	DYNLL2	Q96FJ2	89 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	INTS4	Q96HW7	963 aa	Known RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	KRT23	Q9C075	422 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	RNF41	Q9H4P4	317 aa	Predicted RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	CNNM2	Q9H8M5	875 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	SENP2	Q9HC62	589 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	SH2B1	Q9NRF2	756 aa	Predicted RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	ARPP21	Q9UBL0	812 aa	Predicted RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	MAST2	Q6P0Q8	1798 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	RANBP6	O60518	1105 aa	Known RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	POLR3D	P05423	398 aa	Predicted RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	VIL1	P09327	827 aa	Known RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	CACNB3	P54284	484 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	CCT2	P78371	535 aa	Known RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	CXCL9	Q07325	125 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	PKP1	Q13835	747 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	SBK1	Q52WX2	424 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	C12orf60	Q5U649	245 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	RAB11FIP4	Q86YS3	637 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	BRPF3	Q9ULD4	1205 aa		12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.34	□□□□□ -0.43
NECAP1-223	ENST00000640091	FLT1	P17948	1338 aa		12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	WDHD1	O75717	1129 aa	Predicted RBP	12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	CERS3	Q8IU89	383 aa		12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	IGDCC4	Q8TDY8	1250 aa		12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	ZDHHC15	Q96MV8	337 aa		12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	SYT17	Q9BSW7	474 aa		12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	CWC22	Q9HCG8	908 aa	Known RBP	12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	DDX4	Q9NQI0	724 aa	Known RBP	12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	LAMA4	Q16363	1823 aa		12.33	□□□□□ -0.44
NECAP1-223	ENST00000640091	IFIT3	O14879	490 aa	Known RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	PPFIA3	O75145	1194 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	PDIA3	P30101	505 aa	Known RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	NFIA	Q12857	509 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	PRMT6	Q96LA8	375 aa	Predicted RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	MRI	Q9BWK5	157 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	SCRN1	Q12765	414 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	CFAP100	Q494V2	611 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	TMEM67	Q5HYA8	995 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	FAM47A	Q5JRC9	791 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	ARHGAP27	Q6ZUM4	889 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	FBXL16	Q8N461	479 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	ESR2	Q92731	530 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	NCOA5	Q9HCD5	579 aa	Known RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	SERPINA10	Q9UK55	444 aa		12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	ANGEL1	Q9UNK9	670 aa	Known RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	BRCA1	P38398	1863 aa	Known RBP	12.32	□□□□□ -0.44
NECAP1-223	ENST00000640091	KLF18	A0A0U1RQI7	1052 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	SH2B2	O14492	632 aa	Predicted RBP	12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	SLC3A2	P08195	630 aa	Known RBP	12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	FGR	P09769	529 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	HDLBP	Q00341	1268 aa	Known RBP	12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	ZFPM1	Q8IX07	1006 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	AMOTL1	Q8IY63	956 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	SLC44A5	Q8NCS7	719 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	GML	Q99445	158 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	TDRD3	Q9H7E2	651 aa	Known RBP	12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	SMC3	Q9UQE7	1217 aa		12.31	□□□□□ -0.44
NECAP1-223	ENST00000640091	RXRA	P19793	462 aa		12.31	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms