RNA–Protein interactions for RNA: ENST00000638141.1

CAPN3-221, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 2,358 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-221ENST00000638141 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.65□□□□□ -0.22
CAPN3-221ENST00000638141 FAM210AQ96ND0 272 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 ZSWIM4Q9H7M6 989 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 KDRP35968 1356 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 SLC8A3P57103 927 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 STIM1Q13586 685 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 NAIF1Q69YI7 327 aaPredicted RBP13.65□□□□□ -0.22
CAPN3-221ENST00000638141 SPECC1LQ69YQ0 1117 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 TATDN2Q93075 761 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 INTS13Q9NVM9 706 aa13.65□□□□□ -0.22
CAPN3-221ENST00000638141 GOLGA6CA6NDK9 693 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 RHOXF2BP0C7M4 288 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 GOLGA6DP0CG33 693 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 PAX7P23759 505 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 CEBPZQ03701 1054 aaKnown RBP13.64□□□□□ -0.23
CAPN3-221ENST00000638141 TBC1D8BQ0IIM8 1120 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 RRS1Q15050 365 aaKnown RBP13.64□□□□□ -0.23
CAPN3-221ENST00000638141 OTUD6BQ8N6M0 293 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 CCDC148Q8NFR7 591 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 SH3GL3Q99963 347 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 RHOXF2Q9BQY4 288 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 NBPF3Q9H094 633 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 KLC4Q9NSK0 619 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 GOLGA6AQ9NYA3 693 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 ADGRG1Q9Y653 693 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 USP14P54578 494 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 RCSD1Q6JBY9 416 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 TMED8Q6PL24 325 aaPredicted RBP13.64□□□□□ -0.23
CAPN3-221ENST00000638141 NSUN7Q8NE18 718 aaKnown RBP13.64□□□□□ -0.23
CAPN3-221ENST00000638141 FMNL2Q96PY5 1086 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 NEK1Q96PY6 1258 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 C19orf44Q9H6X5 657 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 VCPKMTQ9H867 229 aa13.64□□□□□ -0.23
CAPN3-221ENST00000638141 PEAK1Q9H792 1746 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 OVOS2A0A0J9YW53 1432 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 OVOS2Q6IE36 1432 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 TMEM232C9JQI7 657 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 KARSQ15046 597 aaKnown RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 TLDC1Q6P9B6 456 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 MAB21L3Q8N8X9 362 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 LINC00301Q8NCQ3 95 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 ARMC2Q8NEN0 867 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 RPGRIP1Q96KN7 1286 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 NAPGQ99747 312 aaPredicted RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 FTOQ9C0B1 505 aaKnown RBP eCLIP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 ATP6V0A4Q9HBG4 840 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 POLR3EQ9NVU0 708 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 SH3BP1Q9Y3L3 701 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 U3KPZ7 1027 aaPredicted RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 LAMA4Q16363 1823 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 SALL1Q9NSC2 1324 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 A0A1B0GVL5 298 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 SRRM3A6NNA2 597 aaPredicted RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 GOLGA8KD6RF30 607 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 MYO1FO00160 1098 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 RASGRP2Q7LDG7 609 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 NBPF5PQ86XG9 351 aaPredicted RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 CD248Q9HCU0 757 aa13.63□□□□□ -0.23
CAPN3-221ENST00000638141 TTF2Q9UNY4 1162 aaKnown RBP13.63□□□□□ -0.23
CAPN3-221ENST00000638141 AGPSO00116 658 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 ZNF202O95125 648 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 EPB41P11171 864 aaKnown RBP13.62□□□□□ -0.23
CAPN3-221ENST00000638141 FECHP22830 423 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 AMPD2Q01433 879 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 STK3Q13188 491 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 OS9Q13438 667 aaPredicted RBP13.62□□□□□ -0.23
CAPN3-221ENST00000638141 CEP85LQ5SZL2 805 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 DDX54Q8TDD1 881 aaKnown RBP13.62□□□□□ -0.23
CAPN3-221ENST00000638141 ZNF483Q8TF39 744 aaPredicted RBP13.62□□□□□ -0.23
CAPN3-221ENST00000638141 RUBCNQ92622 972 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 FBXW7Q969H0 707 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 CRACR2AQ9BSW2 395 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 ETAA1Q9NY74 926 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 OVOS2A0A0G2JMS6 1433 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 MRC1P22897 1456 aa13.62□□□□□ -0.23
CAPN3-221ENST00000638141 USP31Q70CQ4 1352 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 CMA1P23946 247 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 GGCXP38435 758 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 ACTN3Q08043 901 aaPredicted RBP13.61□□□□□ -0.23
CAPN3-221ENST00000638141 SEMA3FQ13275 785 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 COL9A3Q14050 684 aaPredicted RBP13.61□□□□□ -0.23
CAPN3-221ENST00000638141 BRAPQ7Z569 592 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 TICAM2Q86XR7 235 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 ELOA2Q8IYF1 753 aaPredicted RBP13.61□□□□□ -0.23
CAPN3-221ENST00000638141 BATF3Q9NR55 127 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 WASLO00401 505 aaPredicted RBP13.61□□□□□ -0.23
CAPN3-221ENST00000638141 HOXB7P09629 217 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 GOLGA8FQ08AF8 430 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 GOLGA8DPQ0D2H9 430 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 AP1ARQ63HQ0 302 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 CERKQ8TCT0 537 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 FAM227BQ96M60 508 aa13.61□□□□□ -0.23
CAPN3-221ENST00000638141 SPATS2LQ9NUQ6 558 aaKnown RBP13.61□□□□□ -0.23
CAPN3-221ENST00000638141 FAM237AA0A1B0GTK4 181 aa13.6□□□□□ -0.23
CAPN3-221ENST00000638141 RWDD2BP57060 319 aa13.6□□□□□ -0.23
CAPN3-221ENST00000638141 CCDC40Q4G0X9 1142 aa13.6□□□□□ -0.23
CAPN3-221ENST00000638141 Q6ZUG5 572 aa13.6□□□□□ -0.23
CAPN3-221ENST00000638141 UBE3BQ7Z3V4 1068 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms