RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TCHPQ9BT92 498 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 ERBB4Q15303 1308 aa9.96□□□□□ -0.82
VCL-206ENST00000623461 WASLO00401 505 aaPredicted RBP9.95□□□□□ -0.82
VCL-206ENST00000623461 NCBP1Q09161 790 aaKnown RBP9.95□□□□□ -0.82
VCL-206ENST00000623461 IL15P40933 162 aaPredicted RBP9.95□□□□□ -0.82
VCL-206ENST00000623461 NBPF14Q5TI25 921 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 DTHD1Q6ZMT9 781 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 BICDL1Q6ZP65 573 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 CSRNP2Q9H175 543 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 MTMR6Q9Y217 621 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 NR1I2O75469 434 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 PNMA6AP0CW24 399 aaPredicted RBP9.95□□□□□ -0.82
VCL-206ENST00000623461 PLCD1P51178 756 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 SYCE1Q8N0S2 351 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 TSPYL6Q8N831 410 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 RAB17Q9H0T7 212 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 HAUS4Q9H6D7 363 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 GNAT2P19087 354 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 KSR2Q6VAB6 950 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 ZNF526Q8TF50 670 aaPredicted RBP9.95□□□□□ -0.82
VCL-206ENST00000623461 SERPINA10Q9UK55 444 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 NDC80O14777 642 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 CPA1P15085 419 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 PPP2R5EQ16537 467 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 SLF1Q9BQI6 1058 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 CETN3O15182 167 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 ARID5AQ03989 594 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 SLMAPQ14BN4 828 aa9.95□□□□□ -0.82
VCL-206ENST00000623461 TSPY2A6NKD2 308 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 TRIML1Q8N9V2 468 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 HYOU1Q9Y4L1 999 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 SEC31AO94979 1220 aaKnown RBP9.94□□□□□ -0.82
VCL-206ENST00000623461 SLC9C1Q4G0N8 1177 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 PDLIM2Q96JY6 352 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 RABGAP1Q9Y3P9 1069 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 TCP1P17987 556 aaKnown RBP9.94□□□□□ -0.82
VCL-206ENST00000623461 MAP7D1Q3KQU3 841 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 KRT71Q3SY84 523 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 DENND2CQ68D51 928 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 FAM173BQ6P4H8 233 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 KDM5DQ9BY66 1539 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 MAGEA1P43355 309 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 ZNF131P52739 623 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 PPP4R3AQ6IN85 833 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 CNNM4Q6P4Q7 775 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 FBXO38Q6PIJ6 1188 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 FAN1Q9Y2M0 1017 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 SMIM24O75264 130 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 RAB3IL1Q8TBN0 382 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 OTUD7AQ8TE49 926 aaPredicted RBP9.94□□□□□ -0.82
VCL-206ENST00000623461 ATP2B3Q16720 1220 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 TMEM87BQ96K49 555 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 HOMER3Q9NSC5 361 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 KLHL14Q9P2G3 628 aa9.94□□□□□ -0.82
VCL-206ENST00000623461 POLR2DO15514 142 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 PEX19P40855 299 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 TADA2BQ86TJ2 420 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 CCDC63Q8NA47 563 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 CCDC85AQ96PX6 553 aaPredicted RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 VCX3AQ9NNX9 186 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 ABCC2Q92887 1545 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 CTNNA1P35221 906 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 ADKP55263 362 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 PKP1Q13835 747 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 ASIC2Q16515 512 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 VPS52Q8N1B4 723 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 UBL4BQ8N7F7 174 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 N4BP2L2Q92802 583 aaPredicted RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 DDX21Q9NR30 783 aaKnown RBP eCLIP9.93□□□□□ -0.82
VCL-206ENST00000623461 SNRKQ9NRH2 765 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 ATP6V0A2Q9Y487 856 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 DZIP1Q86YF9 867 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 TRMT2AQ8IZ69 625 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 OR8K1Q8NGG5 319 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 GSPT1P15170 499 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 CUL4AQ13619 759 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 CACTINQ8WUQ7 758 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 RAD51AP2Q09MP3 1159 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 PPP2R5AQ15172 486 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 UBE3BQ7Z3V4 1068 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 SLF2Q8IX21 1173 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 TEX14Q8IWB6 1497 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 ABCA5Q8WWZ7 1642 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 BRD2P25440 801 aaKnown RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 RPS6KA1Q15418 735 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 KRT79Q5XKE5 535 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 ZNF710Q8N1W2 664 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 CCHCR1Q8TD31 782 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 STAG1Q8WVM7 1258 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 JPH2Q9BR39 696 aaPredicted RBP9.93□□□□□ -0.82
VCL-206ENST00000623461 CHPF2Q9P2E5 772 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 DEXIO95424 95 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 SEPT14Q6ZU15 432 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 BCAP29Q9UHQ4 241 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 STK38LQ9Y2H1 464 aa9.93□□□□□ -0.82
VCL-206ENST00000623461 TMEM110-MUSTN1A8MSY1 372 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 RGS16O15492 202 aaPredicted RBP9.92□□□□□ -0.82
VCL-206ENST00000623461 FAM114A2Q9NRY5 505 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 NRBP1Q9UHY1 535 aa9.92□□□□□ -0.82
VCL-206ENST00000623461 IRX5P78411 483 aaPredicted RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms