RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 EVCP57679 992 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 PPARAQ07869 468 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 NCOA7Q8NI08 942 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 DPF2Q92785 391 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 ZC3H4Q9UPT8 1303 aaKnown RBP13.92□□□□□ -0.18
PDPN-211ENST00000617617 ORC4O43929 436 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 CD2BP2O95400 341 aaKnown RBP13.92□□□□□ -0.18
PDPN-211ENST00000617617 APPP05067 770 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 AKNAD1Q5T1N1 836 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 TBC1D10CQ8IV04 446 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 SDR42E1Q8WUS8 393 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 MXD3Q9BW11 206 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 KRT23Q9C075 422 aa13.92□□□□□ -0.18
PDPN-211ENST00000617617 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.92□□□□□ -0.18
PDPN-211ENST00000617617 FKBP1CQ5VVH2 108 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 PDRG1Q9NUG6 133 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 HDAC9Q9UKV0 1011 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 SCN4AP35499 1836 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 FLT1P17948 1338 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 RASSF7Q02833 373 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 CUL4AQ13619 759 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 C12orf60Q5U649 245 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 FBXW7Q969H0 707 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 ZSCAN31Q96LW9 406 aaPredicted RBP13.91□□□□□ -0.18
PDPN-211ENST00000617617 ATRNL1Q5VV63 1379 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 WDHD1O75717 1129 aaPredicted RBP13.91□□□□□ -0.18
PDPN-211ENST00000617617 CDC42EP5Q6NZY7 148 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 TEX11Q8IYF3 940 aa13.91□□□□□ -0.18
PDPN-211ENST00000617617 NID2Q14112 1375 aa13.9□□□□□ -0.18
PDPN-211ENST00000617617 SLC3A2P08195 630 aaKnown RBP13.9□□□□□ -0.18
PDPN-211ENST00000617617 SH2B1Q9NRF2 756 aaPredicted RBP13.9□□□□□ -0.18
PDPN-211ENST00000617617 MCM5P33992 734 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 USP5P45974 858 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 AK2P54819 239 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 EIF6P56537 245 aaKnown RBP13.89□□□□□ -0.19
PDPN-211ENST00000617617 KIAA0825Q8IV33 1275 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 INTS4Q96HW7 963 aaKnown RBP13.89□□□□□ -0.19
PDPN-211ENST00000617617 EHD4Q9H223 541 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 LIMCH1Q9UPQ0 1083 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 ENTPD3O75355 529 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 RAD17O75943 681 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 USP17L8P0C7I0 530 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 YBX3P16989 372 aaKnown RBP eCLIP13.89□□□□□ -0.19
PDPN-211ENST00000617617 TOB2Q14106 344 aaPredicted RBP13.89□□□□□ -0.19
PDPN-211ENST00000617617 MFSD6Q6ZSS7 791 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 TMEM87BQ96K49 555 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 UPF3BQ9BZI7 483 aaKnown RBP13.89□□□□□ -0.19
PDPN-211ENST00000617617 TACC3Q9Y6A5 838 aa13.89□□□□□ -0.19
PDPN-211ENST00000617617 SPDYE2BA6NHP3 402 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 USP17L12C9JPN9 530 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 USP17L21D6R901 530 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 SPDYE6P0CI01 402 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 TRDNQ13061 729 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 CFAP100Q494V2 611 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 METTL16Q86W50 562 aaKnown RBP13.88□□□□□ -0.19
PDPN-211ENST00000617617 AMOTL1Q8IY63 956 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 TGFBRAP1Q8WUH2 860 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 USP40Q9NVE5 1235 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 WDR90Q96KV7 1748 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 NEDD4P46934 1319 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 DDIT3P35638 169 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 SCNN1DP51172 638 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 PLIN4Q96Q06 1357 aa13.88□□□□□ -0.19
PDPN-211ENST00000617617 ANTXR2P58335 489 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 HAND2P61296 217 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 GPC2Q8N158 579 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 OGFOD1Q8N543 542 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 OSBPL5Q9H0X9 879 aaPredicted RBP13.87□□□□□ -0.19
PDPN-211ENST00000617617 RCAN1P53805 252 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 SPDYE2Q495Y8 402 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 ARHGAP27Q6ZUM4 889 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 C16orf86Q6ZW13 317 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 RALYLQ86SE5 291 aaKnown RBP13.87□□□□□ -0.19
PDPN-211ENST00000617617 DHX36Q9H2U1 1008 aaKnown RBP13.87□□□□□ -0.19
PDPN-211ENST00000617617 MCM9Q9NXL9 1143 aa13.87□□□□□ -0.19
PDPN-211ENST00000617617 F8W031 263 aaPredicted RBP13.86□□□□□ -0.19
PDPN-211ENST00000617617 LIFRP42702 1097 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 CTDSPL2Q05D32 466 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 GABPAQ06546 454 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 CHMP4CQ96CF2 233 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 TMX3Q96JJ7 454 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 ZNF287Q9HBT7 754 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 TCP11L1Q9NUJ3 509 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 ATAD5Q96QE3 1844 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 PDE4BQ07343 736 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 TTC6Q86TZ1 520 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 SGMS1Q86VZ5 419 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 ZNF274Q96GC6 653 aaPredicted RBP13.86□□□□□ -0.19
PDPN-211ENST00000617617 ZNF541Q9H0D2 1346 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 GRIN3BO60391 1043 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 COL9A3Q14050 684 aaPredicted RBP13.86□□□□□ -0.19
PDPN-211ENST00000617617 FAM83AQ86UY5 434 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 ESR2Q92731 530 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 DDX4Q9NQI0 724 aaKnown RBP13.86□□□□□ -0.19
PDPN-211ENST00000617617 SWAP70Q9UH65 585 aa13.86□□□□□ -0.19
PDPN-211ENST00000617617 MYH4Q9Y623 1939 aa13.85□□□□□ -0.19
PDPN-211ENST00000617617 SH2B2O14492 632 aaPredicted RBP13.85□□□□□ -0.19
PDPN-211ENST00000617617 PRC1O43663 620 aa13.85□□□□□ -0.19
PDPN-211ENST00000617617 CCDC178Q5BJE1 867 aa13.85□□□□□ -0.19
PDPN-211ENST00000617617 Q6ZUG5 572 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms