RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 NBPF3Q9H094 633 aa17.41■□□□□ 0.38
VRK3-212ENST00000596814 USP17L12C9JPN9 530 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 USP17L21D6R901 530 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 E7EWF7 191 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 PICALMQ13492 652 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 SBK1Q52WX2 424 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 TBC1D10CQ8IV04 446 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 MICALL2Q8IY33 904 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 AMOTL1Q8IY63 956 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 PRMT6Q96LA8 375 aaPredicted RBP17.4■□□□□ 0.38
VRK3-212ENST00000596814 UPF3BQ9BZI7 483 aaKnown RBP17.4■□□□□ 0.38
VRK3-212ENST00000596814 MYOZ2Q9NPC6 264 aa17.4■□□□□ 0.38
VRK3-212ENST00000596814 SHTN1A0MZ66 631 aa17.39■□□□□ 0.37
VRK3-212ENST00000596814 TDRD3Q9H7E2 651 aaKnown RBP17.39■□□□□ 0.37
VRK3-212ENST00000596814 CNOT7Q9UIV1 285 aaKnown RBP17.39■□□□□ 0.37
VRK3-212ENST00000596814 ANAPC4Q9UJX5 808 aa17.39■□□□□ 0.37
VRK3-212ENST00000596814 ZC3H4Q9UPT8 1303 aaKnown RBP17.39■□□□□ 0.37
VRK3-212ENST00000596814 CYP2D7A0A087X1C5 515 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 CTDSPL2Q05D32 466 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 BLOC1S2Q6QNY1 142 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 NEK1Q96PY6 1258 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 ZSWIM6Q9HCJ5 1215 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 DDX4Q9NQI0 724 aaKnown RBP17.38■□□□□ 0.37
VRK3-212ENST00000596814 TMOD2Q9NZR1 351 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 SAP30BPQ9UHR5 308 aaKnown RBP17.38■□□□□ 0.37
VRK3-212ENST00000596814 ST18O60284 1047 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 NEK4P51957 841 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 NFIAQ12857 509 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 STAG1Q8WVM7 1258 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 ZBED3Q96IU2 234 aaPredicted RBP17.38■□□□□ 0.37
VRK3-212ENST00000596814 IDI2Q9BXS1 227 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 CYP46A1Q9Y6A2 500 aa17.38■□□□□ 0.37
VRK3-212ENST00000596814 POLR3DP05423 398 aaPredicted RBP17.37■□□□□ 0.37
VRK3-212ENST00000596814 CYP2D6P10635 497 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 CACNB3P54284 484 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 TRDNQ13061 729 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 AKNAD1Q5T1N1 836 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 RUFY3Q7L099 469 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 RALYLQ86SE5 291 aaKnown RBP17.37■□□□□ 0.37
VRK3-212ENST00000596814 IL27Q8NEV9 243 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 OSBPL5Q9H0X9 879 aaPredicted RBP17.37■□□□□ 0.37
VRK3-212ENST00000596814 RNF41Q9H4P4 317 aaPredicted RBP17.37■□□□□ 0.37
VRK3-212ENST00000596814 GPRC5DQ9NZD1 345 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 ROBO3Q96MS0 1386 aa17.37■□□□□ 0.37
VRK3-212ENST00000596814 H7C1D1 291 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 WNT10BO00744 389 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 MYO1BO43795 1136 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 NPM3O75607 178 aaKnown RBP17.36■□□□□ 0.37
VRK3-212ENST00000596814 DDNO94850 711 aaPredicted RBP17.36■□□□□ 0.37
VRK3-212ENST00000596814 SLC3A2P08195 630 aaKnown RBP17.36■□□□□ 0.37
VRK3-212ENST00000596814 HMGB1P09429 215 aaKnown RBP17.36■□□□□ 0.37
VRK3-212ENST00000596814 CPA1P15085 419 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 SLC4A8Q2Y0W8 1093 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 SPDYE2Q495Y8 402 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 C12orf60Q5U649 245 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 MFSD6Q6ZSS7 791 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 NCOA7Q8NI08 942 aa17.36■□□□□ 0.37
VRK3-212ENST00000596814 ZNF70Q9UC06 446 aaPredicted RBP17.36■□□□□ 0.37
VRK3-212ENST00000596814 CLRN2A0PK11 232 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 RPS6KB1P23443 525 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 KIF4BQ2VIQ3 1234 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 STK11IPQ8N1F8 1099 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 SNX21Q969T3 373 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 CNNM2Q9H8M5 875 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 FAM198AQ9UFP1 575 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 NEDD4P46934 1319 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 SMIM22K7EJ46 135 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 PCP11498 1178 aaKnown RBP17.35■□□□□ 0.37
VRK3-212ENST00000596814 EVX2Q03828 476 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 COL9A3Q14050 684 aaPredicted RBP17.35■□□□□ 0.37
VRK3-212ENST00000596814 NBPF9Q3BBW0 867 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 TBC1D10BQ4KMP7 808 aaPredicted RBP17.35■□□□□ 0.37
VRK3-212ENST00000596814 RBM26Q5T8P6 1007 aaKnown RBP17.35■□□□□ 0.37
VRK3-212ENST00000596814 DPY19L2Q6NUT2 758 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 SAMD7Q7Z3H4 446 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 HSCBQ8IWL3 235 aa17.35■□□□□ 0.37
VRK3-212ENST00000596814 ENTPD3O75355 529 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 EGFRP00533 1210 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 COL2A1P02458 1487 aaPredicted RBP17.34■□□□□ 0.37
VRK3-212ENST00000596814 LMOD1P29536 600 aaPredicted RBP17.34■□□□□ 0.37
VRK3-212ENST00000596814 TCP10Q12799 353 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 BECN1Q14457 450 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 MB21D2Q8IYB1 491 aaPredicted RBP17.34■□□□□ 0.37
VRK3-212ENST00000596814 TTC14Q96N46 770 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 KRT23Q9C075 422 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 VEZTQ9HBM0 779 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 PDRG1Q9NUG6 133 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 TACC3Q9Y6A5 838 aa17.34■□□□□ 0.37
VRK3-212ENST00000596814 CD2BP2O95400 341 aaKnown RBP17.33■□□□□ 0.37
VRK3-212ENST00000596814 PLCD1P51178 756 aa17.33■□□□□ 0.37
VRK3-212ENST00000596814 FKBP1CQ5VVH2 108 aa17.33■□□□□ 0.37
VRK3-212ENST00000596814 DHX32Q7L7V1 743 aaKnown RBP17.33■□□□□ 0.37
VRK3-212ENST00000596814 TTC6Q86TZ1 520 aa17.33■□□□□ 0.37
VRK3-212ENST00000596814 INCENPQ9NQS7 918 aa17.33■□□□□ 0.37
VRK3-212ENST00000596814 TOMM22Q9NS69 142 aa17.33■□□□□ 0.37
VRK3-212ENST00000596814 SIPA1L1O43166 1804 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 MYH8P13535 1937 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 B4E1Z4 1266 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 TCP10L2B9ZVM9 353 aa17.33■□□□□ 0.36
VRK3-212ENST00000596814 HLA-DOAP06340 250 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms