RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 TNKS2Q9H2K2 1166 aa9.07□□□□□ -0.96
SMCHD1-207ENST00000581711 PRDM7Q9NQW5 492 aa9.07□□□□□ -0.96
SMCHD1-207ENST00000581711 KRT82Q9NSB4 513 aa9.07□□□□□ -0.96
SMCHD1-207ENST00000581711 PCOLCE2Q9UKZ9 415 aa9.07□□□□□ -0.96
SMCHD1-207ENST00000581711 BRPF3Q9ULD4 1205 aa9.07□□□□□ -0.96
SMCHD1-207ENST00000581711 ZNF503-AS2A6NEH8 195 aa9.06□□□□□ -0.96
SMCHD1-207ENST00000581711 CPNE3O75131 537 aaKnown RBP9.06□□□□□ -0.96
SMCHD1-207ENST00000581711 HNRNPUQ00839 825 aaKnown RBP eCLIP9.06□□□□□ -0.96
SMCHD1-207ENST00000581711 KCNMB1Q16558 191 aa9.06□□□□□ -0.96
SMCHD1-207ENST00000581711 TOP6BLQ8N6T0 577 aa9.06□□□□□ -0.96
SMCHD1-207ENST00000581711 FAM53CQ9NYF3 392 aa9.06□□□□□ -0.96
SMCHD1-207ENST00000581711 TMEM238LA0A1B0GVL6 79 aa9.05□□□□□ -0.96
SMCHD1-207ENST00000581711 NEFMP07197 916 aa9.05□□□□□ -0.96
SMCHD1-207ENST00000581711 MLANAQ16655 118 aa9.05□□□□□ -0.96
SMCHD1-207ENST00000581711 ISL2Q96A47 359 aa9.04□□□□□ -0.96
SMCHD1-207ENST00000581711 SNX11Q9Y5W9 270 aa9.04□□□□□ -0.96
SMCHD1-207ENST00000581711 ICMTO60725 284 aa9.03□□□□□ -0.96
SMCHD1-207ENST00000581711 RAP1GAPP47736 663 aa9.03□□□□□ -0.96
SMCHD1-207ENST00000581711 HEXIM2Q96MH2 286 aaKnown RBP9.03□□□□□ -0.96
SMCHD1-207ENST00000581711 TOX2Q96NM4 488 aa9.03□□□□□ -0.96
SMCHD1-207ENST00000581711 GADD45BO75293 160 aaPredicted RBP9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 IKZF1Q13422 519 aa9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 PDZD3Q86UT5 571 aa9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 ASB11Q8WXH4 323 aa9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 CCDC74AQ96AQ1 378 aa9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 SSU72Q9NP77 194 aaKnown RBP9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 EGFL7Q9UHF1 273 aa9.02□□□□□ -0.97
SMCHD1-207ENST00000581711 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 TSPAN15O95858 294 aa9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 ZNF865P0CJ78 1059 aaPredicted RBP9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 CFPP27918 469 aa9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 ZP2Q05996 745 aa9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 KCNB2Q92953 911 aa9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 LIN37Q96GY3 246 aaPredicted RBP9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 TRAK1Q9UPV9 953 aa9.01□□□□□ -0.97
SMCHD1-207ENST00000581711 CARNS1A5YM72 827 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 H3BRB1 525 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 NDUFB5O43674 189 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 PDE3BQ13370 1112 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 GRM2Q14416 872 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 ECM1Q16610 540 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 C1QL4Q86Z23 238 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 SPACA3Q8IXA5 215 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 PPP1R16BQ96T49 567 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 FAM129BQ96TA1 746 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 TUT1Q9H6E5 874 aaKnown RBP9□□□□□ -0.97
SMCHD1-207ENST00000581711 CTNND2Q9UQB3 1225 aa9□□□□□ -0.97
SMCHD1-207ENST00000581711 ARID3CA6NKF2 412 aa8.99□□□□□ -0.97
SMCHD1-207ENST00000581711 FAM214BQ7L5A3 538 aa8.99□□□□□ -0.97
SMCHD1-207ENST00000581711 RNF214Q8ND24 703 aa8.99□□□□□ -0.97
SMCHD1-207ENST00000581711 CCER1Q8TC90 406 aaPredicted RBP8.99□□□□□ -0.97
SMCHD1-207ENST00000581711 GPN3Q9UHW5 284 aaPredicted RBP8.99□□□□□ -0.97
SMCHD1-207ENST00000581711 EIF1AYO14602 144 aaKnown RBP8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 PPP1R15AO75807 674 aaPredicted RBP8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 PPP2R3AQ06190 1150 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 ZC3H12AQ5D1E8 599 aaKnown RBP8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 FYB2Q5VWT5 728 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 LCNL1Q6ZST4 164 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 GLYCTKQ8IVS8 523 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 LRRC56Q8IYG6 542 aaPredicted RBP8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 DNAJC25Q9H1X3 360 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 TMEM39AQ9NV64 488 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 GTF2IRD1Q9UHL9 959 aa8.98□□□□□ -0.97
SMCHD1-207ENST00000581711 IGF2BP3O00425 579 aaKnown RBP eCLIP8.97□□□□□ -0.97
SMCHD1-207ENST00000581711 ERVK-24P63145 666 aa8.97□□□□□ -0.97
SMCHD1-207ENST00000581711 ARHGAP4P98171 946 aa8.97□□□□□ -0.97
SMCHD1-207ENST00000581711 DTHD1Q6ZMT9 781 aa8.97□□□□□ -0.97
SMCHD1-207ENST00000581711 ZSCAN18Q8TBC5 510 aaPredicted RBP8.97□□□□□ -0.97
SMCHD1-207ENST00000581711 AFMP43652 599 aa8.96□□□□□ -0.98
SMCHD1-207ENST00000581711 NKPD1Q17RQ9 610 aa8.96□□□□□ -0.98
SMCHD1-207ENST00000581711 SULF2Q8IWU5 870 aa8.96□□□□□ -0.98
SMCHD1-207ENST00000581711 STK35Q8TDR2 534 aa8.96□□□□□ -0.98
SMCHD1-207ENST00000581711 KRTAP4-5Q9BYR2 181 aa8.96□□□□□ -0.98
SMCHD1-207ENST00000581711 LILRA6Q6PI73 481 aa8.95□□□□□ -0.98
SMCHD1-207ENST00000581711 SYDE1Q6ZW31 735 aaPredicted RBP8.95□□□□□ -0.98
SMCHD1-207ENST00000581711 PRDM10Q9NQV6 1147 aa8.95□□□□□ -0.98
SMCHD1-207ENST00000581711 GPR182O15218 404 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 GLI1P08151 1106 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 SERPINB4P48594 390 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 FCGRTP55899 365 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 MAP1SQ66K74 1059 aaPredicted RBP8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 PRR23BQ6ZRT6 265 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 ANKLE2Q86XL3 938 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 EPS8L3Q8TE67 593 aaKnown RBP8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 CITED4Q96RK1 184 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 PITPNM2Q9BZ72 1349 aa8.94□□□□□ -0.98
SMCHD1-207ENST00000581711 IGHA2P01877 340 aa8.93□□□□□ -0.98
SMCHD1-207ENST00000581711 CLCN7P51798 805 aa8.93□□□□□ -0.98
SMCHD1-207ENST00000581711 MPZL3Q6UWV2 235 aa8.93□□□□□ -0.98
SMCHD1-207ENST00000581711 SIAH1Q8IUQ4 282 aa8.93□□□□□ -0.98
SMCHD1-207ENST00000581711 NIF3L1Q9GZT8 377 aa8.93□□□□□ -0.98
SMCHD1-207ENST00000581711 ZSCAN22P10073 491 aaPredicted RBP8.92□□□□□ -0.98
SMCHD1-207ENST00000581711 ARNTP27540 789 aa8.92□□□□□ -0.98
SMCHD1-207ENST00000581711 LCE5AQ5TCM9 118 aa8.92□□□□□ -0.98
SMCHD1-207ENST00000581711 GPBAR1Q8TDU6 330 aa8.92□□□□□ -0.98
SMCHD1-207ENST00000581711 KIRREL1Q96J84 757 aa8.92□□□□□ -0.98
SMCHD1-207ENST00000581711 LMCD1Q9NZU5 365 aa8.92□□□□□ -0.98
SMCHD1-207ENST00000581711 GNAT3A8MTJ3 354 aa8.91□□□□□ -0.98
SMCHD1-207ENST00000581711 SUPT5HO00267 1087 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms