RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 CNOT7Q9UIV1 285 aaKnown RBP28.58■■■□□ 2.17
ATPAF1-213ENST00000574428 RABEP1Q15276 862 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 SLC4A8Q2Y0W8 1093 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 TBC1D10CQ8IV04 446 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 DDX4Q9NQI0 724 aaKnown RBP28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 SAP30BPQ9UHR5 308 aaKnown RBP28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 DDX60LQ5H9U9 1706 aaKnown RBP28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 SMIM22K7EJ46 135 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 DDNO94850 711 aaPredicted RBP28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 CYP2D6P10635 497 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 CTDSPL2Q05D32 466 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 MTMR14Q8NCE2 650 aa28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 UPF3BQ9BZI7 483 aaKnown RBP28.57■■■□□ 2.16
ATPAF1-213ENST00000574428 E7EWF7 191 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 EGFRP00533 1210 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 EVX2Q03828 476 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 PPARAQ07869 468 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 NFIAQ12857 509 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 COL9A3Q14050 684 aaPredicted RBP28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 KRT32Q14532 448 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 ARPP21Q9UBL0 812 aaPredicted RBP28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 LAMB1P07942 1786 aa28.56■■■□□ 2.16
ATPAF1-213ENST00000574428 CASTP20810 708 aaKnown RBP28.55■■■□□ 2.16
ATPAF1-213ENST00000574428 RBM26Q5T8P6 1007 aaKnown RBP28.55■■■□□ 2.16
ATPAF1-213ENST00000574428 CPA1P15085 419 aa28.55■■■□□ 2.16
ATPAF1-213ENST00000574428 MMP14P50281 582 aa28.55■■■□□ 2.16
ATPAF1-213ENST00000574428 STK11IPQ8N1F8 1099 aa28.55■■■□□ 2.16
ATPAF1-213ENST00000574428 CLRN2A0PK11 232 aa28.54■■■□□ 2.16
ATPAF1-213ENST00000574428 SAMD7Q7Z3H4 446 aa28.54■■■□□ 2.16
ATPAF1-213ENST00000574428 ZBED3Q96IU2 234 aaPredicted RBP28.54■■■□□ 2.16
ATPAF1-213ENST00000574428 GPRC5DQ9NZD1 345 aa28.54■■■□□ 2.16
ATPAF1-213ENST00000574428 NBPF9Q3BBW0 867 aa28.53■■■□□ 2.16
ATPAF1-213ENST00000574428 TBC1D10BQ4KMP7 808 aaPredicted RBP28.53■■■□□ 2.16
ATPAF1-213ENST00000574428 SBK1Q52WX2 424 aa28.53■■■□□ 2.16
ATPAF1-213ENST00000574428 TM6SF1Q9BZW5 370 aa28.53■■■□□ 2.16
ATPAF1-213ENST00000574428 WNT10BO00744 389 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 NEK4P51957 841 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 INCENPQ9NQS7 918 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 ANAPC4Q9UJX5 808 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 PSMA5P28066 241 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 NEK1Q96PY6 1258 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 IDI2Q9BXS1 227 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 ZSWIM6Q9HCJ5 1215 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 ZNF70Q9UC06 446 aaPredicted RBP28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 FAM198AQ9UFP1 575 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 TACC3Q9Y6A5 838 aa28.52■■■□□ 2.16
ATPAF1-213ENST00000574428 MYH1P12882 1939 aa28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 H7C1D1 291 aa28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 POLR3DP05423 398 aaPredicted RBP28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 TCP10Q12799 353 aa28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 SPDYE2Q495Y8 402 aa28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 C12orf60Q5U649 245 aa28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 OSBPL5Q9H0X9 879 aaPredicted RBP28.51■■■□□ 2.15
ATPAF1-213ENST00000574428 KIF4BQ2VIQ3 1234 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 ZFPM1Q8IX07 1006 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 AMOTL1Q8IY63 956 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 TMOD2Q9NZR1 351 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 NEDD4P46934 1319 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 ZC3H4Q9UPT8 1303 aaKnown RBP28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 EPS15P42566 896 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 PLCD1P51178 756 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 AKNAD1Q5T1N1 836 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 BLOC1S2Q6QNY1 142 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 CYP46A1Q9Y6A2 500 aa28.5■■■□□ 2.15
ATPAF1-213ENST00000574428 MYO1BO43795 1136 aa28.49■■■□□ 2.15
ATPAF1-213ENST00000574428 DPY19L2Q6NUT2 758 aa28.49■■■□□ 2.15
ATPAF1-213ENST00000574428 RUFY3Q7L099 469 aa28.49■■■□□ 2.15
ATPAF1-213ENST00000574428 STAG1Q8WVM7 1258 aa28.49■■■□□ 2.15
ATPAF1-213ENST00000574428 VEZTQ9HBM0 779 aa28.49■■■□□ 2.15
ATPAF1-213ENST00000574428 TCP10L2B9ZVM9 353 aa28.48■■■□□ 2.15
ATPAF1-213ENST00000574428 CD2BP2O95400 341 aaKnown RBP28.48■■■□□ 2.15
ATPAF1-213ENST00000574428 MFSD6Q6ZSS7 791 aa28.48■■■□□ 2.15
ATPAF1-213ENST00000574428 NKX2-3Q8TAU0 364 aa28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 TRPM4Q8TD43 1214 aa28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 TCEANC2Q96MN5 208 aa28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 RPS6KB1P23443 525 aa28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 RALYLQ86SE5 291 aaKnown RBP28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 NCOA7Q8NI08 942 aa28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 DYNLL2Q96FJ2 89 aa28.47■■■□□ 2.15
ATPAF1-213ENST00000574428 ROBO3Q96MS0 1386 aa28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 NPM3O75607 178 aaKnown RBP28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 LMOD1P29536 600 aaPredicted RBP28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 TRDNQ13061 729 aa28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 RNF41Q9H4P4 317 aaPredicted RBP28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 TOMM22Q9NS69 142 aa28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 ASTN2O75129 1339 aaPredicted RBP28.46■■■□□ 2.15
ATPAF1-213ENST00000574428 ST18O60284 1047 aa28.45■■■□□ 2.15
ATPAF1-213ENST00000574428 SLC3A2P08195 630 aaKnown RBP28.45■■■□□ 2.15
ATPAF1-213ENST00000574428 RRP12Q5JTH9 1297 aaKnown RBP28.45■■■□□ 2.15
ATPAF1-213ENST00000574428 B4E1Z4 1266 aa28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 ENTPD3O75355 529 aa28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 PRDM1O75626 825 aa28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 HMGB1P09429 215 aaKnown RBP28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 MB21D2Q8IYB1 491 aaPredicted RBP28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 TTC14Q96N46 770 aa28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 PDRG1Q9NUG6 133 aa28.45■■■□□ 2.14
ATPAF1-213ENST00000574428 GLTPD2A6NH11 291 aa28.44■■■□□ 2.14
ATPAF1-213ENST00000574428 SH3BP5LQ7L8J4 393 aa28.44■■■□□ 2.14
ATPAF1-213ENST00000574428 CHST3Q7LGC8 479 aa28.44■■■□□ 2.14
ATPAF1-213ENST00000574428 CNNM2Q9H8M5 875 aa28.44■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms