RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 USP17L12C9JPN9 530 aa22.22■■□□□ 1.15
COMMD4-213ENST00000565834 USP17L21D6R901 530 aa22.22■■□□□ 1.15
COMMD4-213ENST00000565834 MCM2P49736 904 aa22.22■■□□□ 1.15
COMMD4-213ENST00000565834 MAPKAPK5Q8IW41 473 aa22.22■■□□□ 1.15
COMMD4-213ENST00000565834 MCM9Q9NXL9 1143 aa22.22■■□□□ 1.15
COMMD4-213ENST00000565834 ANAPC4Q9UJX5 808 aa22.22■■□□□ 1.15
COMMD4-213ENST00000565834 K7ELQ4 463 aaPredicted RBP22.21■■□□□ 1.15
COMMD4-213ENST00000565834 USP17L8P0C7I0 530 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 SLC4A3P48751 1232 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 TRDNQ13061 729 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 CFAP100Q494V2 611 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 SBK1Q52WX2 424 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 CDC42EP5Q6NZY7 148 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 RALYLQ86SE5 291 aaKnown RBP22.21■■□□□ 1.15
COMMD4-213ENST00000565834 NCOA7Q8NI08 942 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 FLT1P17948 1338 aa22.21■■□□□ 1.15
COMMD4-213ENST00000565834 RPS12P25398 132 aaKnown RBP22.2■■□□□ 1.15
COMMD4-213ENST00000565834 COL9A3Q14050 684 aaPredicted RBP22.2■■□□□ 1.15
COMMD4-213ENST00000565834 AKNAD1Q5T1N1 836 aa22.2■■□□□ 1.15
COMMD4-213ENST00000565834 AMOTL1Q8IY63 956 aa22.2■■□□□ 1.15
COMMD4-213ENST00000565834 RNF41Q9H4P4 317 aaPredicted RBP22.2■■□□□ 1.15
COMMD4-213ENST00000565834 PCDHAC2Q9Y5I4 1007 aa22.2■■□□□ 1.15
COMMD4-213ENST00000565834 CYP2D7A0A087X1C5 515 aa22.2■■□□□ 1.14
COMMD4-213ENST00000565834 MFSD6Q6ZSS7 791 aa22.2■■□□□ 1.14
COMMD4-213ENST00000565834 DHX32Q7L7V1 743 aaKnown RBP22.2■■□□□ 1.14
COMMD4-213ENST00000565834 STAG1Q8WVM7 1258 aa22.2■■□□□ 1.14
COMMD4-213ENST00000565834 AK2P54819 239 aa22.19■■□□□ 1.14
COMMD4-213ENST00000565834 TCEANC2Q96MN5 208 aa22.19■■□□□ 1.14
COMMD4-213ENST00000565834 CNNM2Q9H8M5 875 aa22.19■■□□□ 1.14
COMMD4-213ENST00000565834 WDHD1O75717 1129 aaPredicted RBP22.18■■□□□ 1.14
COMMD4-213ENST00000565834 MMP14P50281 582 aa22.18■■□□□ 1.14
COMMD4-213ENST00000565834 GJA3Q9Y6H8 435 aa22.18■■□□□ 1.14
COMMD4-213ENST00000565834 NEDD4P46934 1319 aa22.18■■□□□ 1.14
COMMD4-213ENST00000565834 ZNF541Q9H0D2 1346 aa22.18■■□□□ 1.14
COMMD4-213ENST00000565834 POLR3DP05423 398 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 SLC3A2P08195 630 aaKnown RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 CYP2D6P10635 497 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 PICALMQ13492 652 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 DLGAP5Q15398 846 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 GPR162Q16538 588 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 C12orf60Q5U649 245 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 NOL8Q76FK4 1167 aaKnown RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 MB21D2Q8IYB1 491 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 KRT23Q9C075 422 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 ALDH8A1Q9H2A2 487 aaPredicted RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 SAP30BPQ9UHR5 308 aaKnown RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 SPDYE2BA6NHP3 402 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 SPDYE6P0CI01 402 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 MCM5P33992 734 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 EXOSC10Q01780 885 aaKnown RBP22.17■■□□□ 1.14
COMMD4-213ENST00000565834 STK11IPQ8N1F8 1099 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 TOMM22Q9NS69 142 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 RNF181Q9P0P0 153 aa22.17■■□□□ 1.14
COMMD4-213ENST00000565834 B4E1Z4 1266 aa22.16■■□□□ 1.14
COMMD4-213ENST00000565834 PCP11498 1178 aaKnown RBP22.16■■□□□ 1.14
COMMD4-213ENST00000565834 GMPSP49915 693 aaPredicted RBP22.16■■□□□ 1.14
COMMD4-213ENST00000565834 ANKRD1Q15327 319 aa22.16■■□□□ 1.14
COMMD4-213ENST00000565834 SLC4A8Q2Y0W8 1093 aa22.16■■□□□ 1.14
COMMD4-213ENST00000565834 PRMT6Q96LA8 375 aaPredicted RBP22.16■■□□□ 1.14
COMMD4-213ENST00000565834 DDX4Q9NQI0 724 aaKnown RBP22.16■■□□□ 1.14
COMMD4-213ENST00000565834 INCENPQ9NQS7 918 aa22.16■■□□□ 1.14
COMMD4-213ENST00000565834 TACC3Q9Y6A5 838 aa22.16■■□□□ 1.14
COMMD4-213ENST00000565834 SMIM22K7EJ46 135 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 FGD1P98174 961 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 Q6ZUG5 572 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 MTMR14Q8NCE2 650 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 DPF2Q92785 391 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 TDRD3Q9H7E2 651 aaKnown RBP22.15■■□□□ 1.14
COMMD4-213ENST00000565834 WDR19Q8NEZ3 1342 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 ROBO3Q96MS0 1386 aa22.15■■□□□ 1.14
COMMD4-213ENST00000565834 EVX2Q03828 476 aa22.14■■□□□ 1.14
COMMD4-213ENST00000565834 RRP12Q5JTH9 1297 aaKnown RBP22.14■■□□□ 1.14
COMMD4-213ENST00000565834 IDI2Q9BXS1 227 aa22.14■■□□□ 1.14
COMMD4-213ENST00000565834 LIMCH1Q9UPQ0 1083 aa22.14■■□□□ 1.14
COMMD4-213ENST00000565834 PRC1O43663 620 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 ZNF280AP59817 542 aaPredicted RBP22.14■■□□□ 1.13
COMMD4-213ENST00000565834 PDE4BQ07343 736 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 NFIAQ12857 509 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 CHST3Q7LGC8 479 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 LRRC2Q9BYS8 371 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 OSBPL5Q9H0X9 879 aaPredicted RBP22.14■■□□□ 1.13
COMMD4-213ENST00000565834 MYOZ2Q9NPC6 264 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 TMOD2Q9NZR1 351 aa22.14■■□□□ 1.13
COMMD4-213ENST00000565834 KDM4AO75164 1064 aa22.13■■□□□ 1.13
COMMD4-213ENST00000565834 FGRP09769 529 aa22.13■■□□□ 1.13
COMMD4-213ENST00000565834 CACNB3P54284 484 aa22.13■■□□□ 1.13
COMMD4-213ENST00000565834 ANTXR2P58335 489 aa22.13■■□□□ 1.13
COMMD4-213ENST00000565834 TOB2Q14106 344 aaPredicted RBP22.13■■□□□ 1.13
COMMD4-213ENST00000565834 GPC2Q8N158 579 aa22.13■■□□□ 1.13
COMMD4-213ENST00000565834 TMX3Q96JJ7 454 aa22.13■■□□□ 1.13
COMMD4-213ENST00000565834 GRIN3BO60391 1043 aa22.12■■□□□ 1.13
COMMD4-213ENST00000565834 NPM3O75607 178 aaKnown RBP22.12■■□□□ 1.13
COMMD4-213ENST00000565834 PLCD1P51178 756 aa22.12■■□□□ 1.13
COMMD4-213ENST00000565834 C9orf131Q5VYM1 1079 aa22.12■■□□□ 1.13
COMMD4-213ENST00000565834 CYB5R4Q7L1T6 521 aa22.12■■□□□ 1.13
COMMD4-213ENST00000565834 MICALL2Q8IY33 904 aa22.12■■□□□ 1.13
COMMD4-213ENST00000565834 ESR2Q92731 530 aa22.12■■□□□ 1.13
COMMD4-213ENST00000565834 LARP6Q9BRS8 491 aaKnown RBP22.12■■□□□ 1.13
COMMD4-213ENST00000565834 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.12■■□□□ 1.13
COMMD4-213ENST00000565834 UTRNP46939 3433 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms