RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 ZNF541Q9H0D2 1346 aa12.07□□□□□ -0.48
SMG1-208ENST00000563448 POLR2AP24928 1970 aaKnown RBP12.06□□□□□ -0.48
SMG1-208ENST00000563448 USP17L12C9JPN9 530 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 USP17L21D6R901 530 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 USP17L8P0C7I0 530 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 RPS6KB1P23443 525 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 EVX2Q03828 476 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 BECN1Q14457 450 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 SBK1Q52WX2 424 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 HSCBQ8IWL3 235 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 INCENPQ9NQS7 918 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 ANAPC4Q9UJX5 808 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 FLT1P17948 1338 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 WDHD1O75717 1129 aaPredicted RBP12.06□□□□□ -0.48
SMG1-208ENST00000563448 CYP2D6P10635 497 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 IL27Q8NEV9 243 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 NKX2-3Q8TAU0 364 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 TCEANC2Q96MN5 208 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 DDX4Q9NQI0 724 aaKnown RBP12.06□□□□□ -0.48
SMG1-208ENST00000563448 PDRG1Q9NUG6 133 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 MCM9Q9NXL9 1143 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 ARPP21Q9UBL0 812 aaPredicted RBP12.06□□□□□ -0.48
SMG1-208ENST00000563448 HDAC9Q9UKV0 1011 aa12.06□□□□□ -0.48
SMG1-208ENST00000563448 SHTN1A0MZ66 631 aa12.05□□□□□ -0.48
SMG1-208ENST00000563448 AK2P54819 239 aa12.05□□□□□ -0.48
SMG1-208ENST00000563448 EXOSC10Q01780 885 aaKnown RBP12.05□□□□□ -0.48
SMG1-208ENST00000563448 AKNAD1Q5T1N1 836 aa12.05□□□□□ -0.48
SMG1-208ENST00000563448 NCOA7Q8NI08 942 aa12.05□□□□□ -0.48
SMG1-208ENST00000563448 STAG1Q8WVM7 1258 aa12.05□□□□□ -0.48
SMG1-208ENST00000563448 PRMT6Q96LA8 375 aaPredicted RBP12.05□□□□□ -0.48
SMG1-208ENST00000563448 NEDD4P46934 1319 aa12.05□□□□□ -0.48
SMG1-208ENST00000563448 HMGB1P09429 215 aaKnown RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 RPS12P25398 132 aaKnown RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 C12orf60Q5U649 245 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 DHX32Q7L7V1 743 aaKnown RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 MB21D2Q8IYB1 491 aaPredicted RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 STK11IPQ8N1F8 1099 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 OGFOD1Q8N543 542 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 ALDH8A1Q9H2A2 487 aaPredicted RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 GJA3Q9Y6H8 435 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 SPDYE2BA6NHP3 402 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 K7ELQ4 463 aaPredicted RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 SPDYE6P0CI01 402 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 GMPSP49915 693 aaPredicted RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 PICALMQ13492 652 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 GPR162Q16538 588 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 SLC4A8Q2Y0W8 1093 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 MFSD6Q6ZSS7 791 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 MTMR14Q8NCE2 650 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 TDRD3Q9H7E2 651 aaKnown RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 RNF181Q9P0P0 153 aa12.04□□□□□ -0.48
SMG1-208ENST00000563448 SAP30BPQ9UHR5 308 aaKnown RBP12.04□□□□□ -0.48
SMG1-208ENST00000563448 ROBO3Q96MS0 1386 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 FGRP09769 529 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 CACNB3P54284 484 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 NFIAQ12857 509 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 TOB2Q14106 344 aaPredicted RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 DLGAP5Q15398 846 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 NOL8Q76FK4 1167 aaKnown RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 CYB5R4Q7L1T6 521 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 CHST3Q7LGC8 479 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 RALYLQ86SE5 291 aaKnown RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 DPF2Q92785 391 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 ZBED3Q96IU2 234 aaPredicted RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 IDI2Q9BXS1 227 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 B4E1Z4 1266 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 POLR3DP05423 398 aaPredicted RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 MCM2P49736 904 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 PLCD1P51178 756 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 ANTXR2P58335 489 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 ZNF280AP59817 542 aaPredicted RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 TRDNQ13061 729 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 Q6ZUG5 572 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 LARP6Q9BRS8 491 aaKnown RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 LRRC2Q9BYS8 371 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 OSBPL5Q9H0X9 879 aaPredicted RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 RNF41Q9H4P4 317 aaPredicted RBP12.03□□□□□ -0.48
SMG1-208ENST00000563448 MYOZ2Q9NPC6 264 aa12.03□□□□□ -0.48
SMG1-208ENST00000563448 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.03□□□□□ -0.48
SMG1-208ENST00000563448 MCM5P33992 734 aa12.02□□□□□ -0.49
SMG1-208ENST00000563448 MMP14P50281 582 aa12.02□□□□□ -0.49
SMG1-208ENST00000563448 C9orf131Q5VYM1 1079 aa12.02□□□□□ -0.49
SMG1-208ENST00000563448 KRT23Q9C075 422 aa12.02□□□□□ -0.49
SMG1-208ENST00000563448 CNNM2Q9H8M5 875 aa12.02□□□□□ -0.49
SMG1-208ENST00000563448 FAM198AQ9UFP1 575 aa12.02□□□□□ -0.49
SMG1-208ENST00000563448 GREB1LQ9C091 1923 aaPredicted RBP12.01□□□□□ -0.49
SMG1-208ENST00000563448 PRC1O43663 620 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 KDM4AO75164 1064 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 RRP12Q5JTH9 1297 aaKnown RBP12.01□□□□□ -0.49
SMG1-208ENST00000563448 ZFPM1Q8IX07 1006 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 MICALL2Q8IY33 904 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 AMOTL1Q8IY63 956 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 GPC2Q8N158 579 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 DYNLL2Q96FJ2 89 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 AGXT2Q9BYV1 514 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 CNOT7Q9UIV1 285 aaKnown RBP12.01□□□□□ -0.49
SMG1-208ENST00000563448 WDR19Q8NEZ3 1342 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 WNT10BO00744 389 aa12.01□□□□□ -0.49
SMG1-208ENST00000563448 NPM3O75607 178 aaKnown RBP12.01□□□□□ -0.49
SMG1-208ENST00000563448 EGFRP00533 1210 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms