RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ETNK1Q9HBU6 452 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 PPP4R2Q9NY27 417 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 SERTAD1Q9UHV2 236 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 PRKAB1Q9Y478 270 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 PCDHGB7Q9Y5F8 929 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 OVOS2A0A0G2JMS6 1433 aa6.41□□□□□ -1.38
LDLR-209ENST00000558528 BTBD11A6QL63 1104 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 K7ELQ4 463 aaPredicted RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 CPNE3O75131 537 aaKnown RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 ZPR1O75312 459 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 HSPA1AP0DMV8 641 aaKnown RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 HSPA1BP0DMV9 641 aaKnown RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 VARSP26640 1264 aaKnown RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 ZAP70P43403 619 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 SMTNP53814 917 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 CABP4P57796 275 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 RAB15P59190 212 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 DCTN1Q14203 1278 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 TAF1CQ15572 869 aaPredicted RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 RTN1Q16799 776 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 CCDC30Q5VVM6 783 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 VASH1Q7L8A9 365 aaPredicted RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 GPATCH3Q96I76 525 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 STK31Q9BXU1 1019 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 API5Q9BZZ5 524 aaKnown RBP6.4□□□□□ -1.38
LDLR-209ENST00000558528 SMC4Q9NTJ3 1288 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 FAM8A1Q9UBU6 413 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 STRIP2Q9ULQ0 834 aa6.4□□□□□ -1.38
LDLR-209ENST00000558528 CEMIPQ8WUJ3 1361 aa6.4□□□□□ -1.39
LDLR-209ENST00000558528 COL5A2P05997 1499 aaPredicted RBP6.4□□□□□ -1.39
LDLR-209ENST00000558528 PARP4Q9UKK3 1724 aaKnown RBP6.39□□□□□ -1.39
LDLR-209ENST00000558528 CRYBG1Q9Y4K1 1723 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 CDK2AP1O14519 115 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 WNT7BP56706 349 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 COPS2P61201 443 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 ADGRD1Q6QNK2 874 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 FTSJ3Q8IY81 847 aaKnown RBP6.39□□□□□ -1.39
LDLR-209ENST00000558528 TTC5Q8N0Z6 440 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 TSR2Q969E8 191 aaKnown RBP6.39□□□□□ -1.39
LDLR-209ENST00000558528 THUMPD2Q9BTF0 503 aaKnown RBP6.39□□□□□ -1.39
LDLR-209ENST00000558528 TEX13AQ9BXU3 409 aaPredicted RBP6.39□□□□□ -1.39
LDLR-209ENST00000558528 SLC52A2Q9HAB3 445 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 SIRPGQ9P1W8 387 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 LRFN2Q9ULH4 789 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 PAPPAQ13219 1627 aa6.39□□□□□ -1.39
LDLR-209ENST00000558528 SERTM1A2A2V5 107 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 BCAR3O75815 825 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 SSBP05455 408 aaKnown RBP eCLIP6.38□□□□□ -1.39
LDLR-209ENST00000558528 BCAMP50895 628 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 PAK2Q13177 524 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 SERINC3Q13530 473 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 PWP1Q13610 501 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 DDB1Q16531 1140 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 HIF1AQ16665 826 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 TXNRD1Q16881 649 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 TAF7LQ5H9L4 462 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 ATF7IPQ6VMQ6 1270 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 MPRIPQ6WCQ1 1025 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 PTF1AQ7RTS3 328 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 ATCAYQ86WG3 371 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 DZIP1LQ8IYY4 767 aaKnown RBP6.38□□□□□ -1.39
LDLR-209ENST00000558528 FRAT1Q92837 279 aaPredicted RBP6.38□□□□□ -1.39
LDLR-209ENST00000558528 WNT2BQ93097 391 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 LGR6Q9HBX8 967 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 HDAC5Q9UQL6 1122 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 MRPL42Q9Y6G3 142 aaKnown RBP6.38□□□□□ -1.39
LDLR-209ENST00000558528 PTPRCP08575 1304 aa6.38□□□□□ -1.39
LDLR-209ENST00000558528 BCL9O00512 1426 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 PPP1R12AO14974 1030 aaPredicted RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 ZBTB39O15060 712 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 HRO43593 1189 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 RGS19P49795 217 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 EIF4A1P60842 406 aaKnown RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 SH3BP2P78314 561 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 MLLT1Q03111 559 aaPredicted RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 NFX1Q12986 1120 aaKnown RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 TEAD4Q15561 434 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 ERMP1Q7Z2K6 904 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 LRP10Q7Z4F1 713 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 C8orf58Q8NAV2 365 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 DDX54Q8TDD1 881 aaKnown RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 SSH1Q8WYL5 1049 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 CCDC136Q96JN2 1154 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 FMNL2Q96PY5 1086 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 SLKQ9H2G2 1235 aaPredicted RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 DMGDHQ9UI17 866 aaKnown RBP6.37□□□□□ -1.39
LDLR-209ENST00000558528 DDX19BQ9UMR2 479 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 PPME1Q9Y570 386 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 COL4A3BPQ9Y5P4 624 aa6.37□□□□□ -1.39
LDLR-209ENST00000558528 ELL2O00472 640 aaPredicted RBP6.36□□□□□ -1.39
LDLR-209ENST00000558528 CYP27B1O15528 508 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 DNAJC6O75061 913 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 SNRPA1P09661 255 aaKnown RBP6.36□□□□□ -1.39
LDLR-209ENST00000558528 ORC1Q13415 861 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 DGKZQ13574 1117 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 COL9A2Q14055 689 aaPredicted RBP6.36□□□□□ -1.39
LDLR-209ENST00000558528 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.36□□□□□ -1.39
LDLR-209ENST00000558528 ZNF790Q6PG37 636 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 CERS3Q8IU89 383 aa6.36□□□□□ -1.39
LDLR-209ENST00000558528 ETFBKMTQ8IXQ9 262 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms