RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 TNKS2Q9H2K2 1166 aa7.39□□□□□ -1.23
SCFD1-218ENST00000556256 KRT82Q9NSB4 513 aa7.39□□□□□ -1.23
SCFD1-218ENST00000556256 TMEM238LA0A1B0GVL6 79 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 CPNE3O75131 537 aaKnown RBP7.38□□□□□ -1.23
SCFD1-218ENST00000556256 NEFMP07197 916 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 GSTP1P09211 210 aaKnown RBP7.38□□□□□ -1.23
SCFD1-218ENST00000556256 ZNF865P0CJ78 1059 aaPredicted RBP7.38□□□□□ -1.23
SCFD1-218ENST00000556256 ITIH2P19823 946 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 CFPP27918 469 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 RAP1GAPP47736 663 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 KCNMB1Q16558 191 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 PRPF40BQ6NWY9 871 aaKnown RBP7.38□□□□□ -1.23
SCFD1-218ENST00000556256 BRPF3Q9ULD4 1205 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 SNX11Q9Y5W9 270 aa7.38□□□□□ -1.23
SCFD1-218ENST00000556256 ECM1Q16610 540 aa7.37□□□□□ -1.23
SCFD1-218ENST00000556256 FAM214BQ7L5A3 538 aa7.37□□□□□ -1.23
SCFD1-218ENST00000556256 TOP6BLQ8N6T0 577 aa7.37□□□□□ -1.23
SCFD1-218ENST00000556256 CCER1Q8TC90 406 aaPredicted RBP7.37□□□□□ -1.23
SCFD1-218ENST00000556256 ISL2Q96A47 359 aa7.37□□□□□ -1.23
SCFD1-218ENST00000556256 CARNS1A5YM72 827 aa7.36□□□□□ -1.23
SCFD1-218ENST00000556256 ICMTO60725 284 aa7.36□□□□□ -1.23
SCFD1-218ENST00000556256 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.36□□□□□ -1.23
SCFD1-218ENST00000556256 CCDC74AQ96AQ1 378 aa7.36□□□□□ -1.23
SCFD1-218ENST00000556256 LIN37Q96GY3 246 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-218ENST00000556256 SSU72Q9NP77 194 aaKnown RBP7.36□□□□□ -1.23
SCFD1-218ENST00000556256 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.35□□□□□ -1.23
SCFD1-218ENST00000556256 ZP2Q05996 745 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 IKZF1Q13422 519 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 FYB2Q5VWT5 728 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 PDZD3Q86UT5 571 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 ASB11Q8WXH4 323 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 KCNB2Q92953 911 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 TOX2Q96NM4 488 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 CTNND2Q9UQB3 1225 aa7.35□□□□□ -1.23
SCFD1-218ENST00000556256 GADD45BO75293 160 aaPredicted RBP7.34□□□□□ -1.23
SCFD1-218ENST00000556256 ZC3H12AQ5D1E8 599 aaKnown RBP7.34□□□□□ -1.23
SCFD1-218ENST00000556256 LCNL1Q6ZST4 164 aa7.34□□□□□ -1.23
SCFD1-218ENST00000556256 C1QL4Q86Z23 238 aa7.34□□□□□ -1.23
SCFD1-218ENST00000556256 TSPAN15O95858 294 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 HNRNPUQ00839 825 aaKnown RBP eCLIP7.33□□□□□ -1.24
SCFD1-218ENST00000556256 GRM2Q14416 872 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 SPACA3Q8IXA5 215 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 RNF214Q8ND24 703 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 KRTAP4-5Q9BYR2 181 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 TMEM39AQ9NV64 488 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 EGFL7Q9UHF1 273 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 TRAK1Q9UPV9 953 aa7.33□□□□□ -1.24
SCFD1-218ENST00000556256 ARID3CA6NKF2 412 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 IGF2BP3O00425 579 aaKnown RBP eCLIP7.32□□□□□ -1.24
SCFD1-218ENST00000556256 EIF1AYO14602 144 aaKnown RBP7.32□□□□□ -1.24
SCFD1-218ENST00000556256 ERVK-24P63145 666 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 PPP2R3AQ06190 1150 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 PDE3BQ13370 1112 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 NKPD1Q17RQ9 610 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 LILRA6Q6PI73 481 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 LRRC56Q8IYG6 542 aaPredicted RBP7.32□□□□□ -1.24
SCFD1-218ENST00000556256 ZSCAN18Q8TBC5 510 aaPredicted RBP7.32□□□□□ -1.24
SCFD1-218ENST00000556256 STK35Q8TDR2 534 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 FAM129BQ96TA1 746 aa7.32□□□□□ -1.24
SCFD1-218ENST00000556256 PPP1R15AO75807 674 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-218ENST00000556256 AFMP43652 599 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 ARHGAP4P98171 946 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 PRR23BQ6ZRT6 265 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 SYDE1Q6ZW31 735 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-218ENST00000556256 ANKLE2Q86XL3 938 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 SIAH1Q8IUQ4 282 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 PPP1R16BQ96T49 567 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 DNAJC25Q9H1X3 360 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 GTF2IRD1Q9UHL9 959 aa7.31□□□□□ -1.24
SCFD1-218ENST00000556256 H3BRB1 525 aa7.3□□□□□ -1.24
SCFD1-218ENST00000556256 NDUFB5O43674 189 aa7.3□□□□□ -1.24
SCFD1-218ENST00000556256 DTHD1Q6ZMT9 781 aa7.3□□□□□ -1.24
SCFD1-218ENST00000556256 EPS8L3Q8TE67 593 aaKnown RBP7.3□□□□□ -1.24
SCFD1-218ENST00000556256 NIF3L1Q9GZT8 377 aa7.3□□□□□ -1.24
SCFD1-218ENST00000556256 TUT1Q9H6E5 874 aaKnown RBP7.3□□□□□ -1.24
SCFD1-218ENST00000556256 PRDM10Q9NQV6 1147 aa7.3□□□□□ -1.24
SCFD1-218ENST00000556256 GPN3Q9UHW5 284 aaPredicted RBP7.3□□□□□ -1.24
SCFD1-218ENST00000556256 ZSCAN22P10073 491 aaPredicted RBP7.29□□□□□ -1.24
SCFD1-218ENST00000556256 ARNTP27540 789 aa7.29□□□□□ -1.24
SCFD1-218ENST00000556256 FCGRTP55899 365 aa7.29□□□□□ -1.24
SCFD1-218ENST00000556256 LCE5AQ5TCM9 118 aa7.29□□□□□ -1.24
SCFD1-218ENST00000556256 GLYCTKQ8IVS8 523 aa7.29□□□□□ -1.24
SCFD1-218ENST00000556256 SULF2Q8IWU5 870 aa7.29□□□□□ -1.24
SCFD1-218ENST00000556256 PITPNM2Q9BZ72 1349 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 IGHA2P01877 340 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 KRT1P04264 644 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 GLI1P08151 1106 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 C1QTNF9P0C862 333 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 MAP1SQ66K74 1059 aaPredicted RBP7.28□□□□□ -1.24
SCFD1-218ENST00000556256 MPZL3Q6UWV2 235 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 CITED4Q96RK1 184 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 LMCD1Q9NZU5 365 aa7.28□□□□□ -1.24
SCFD1-218ENST00000556256 SERPINB4P48594 390 aa7.27□□□□□ -1.25
SCFD1-218ENST00000556256 CYFIP1Q7L576 1253 aa7.27□□□□□ -1.25
SCFD1-218ENST00000556256 GPBAR1Q8TDU6 330 aa7.27□□□□□ -1.25
SCFD1-218ENST00000556256 KIRREL1Q96J84 757 aa7.27□□□□□ -1.25
SCFD1-218ENST00000556256 GPR182O15218 404 aa7.26□□□□□ -1.25
SCFD1-218ENST00000556256 EOMESO95936 686 aa7.26□□□□□ -1.25
SCFD1-218ENST00000556256 NTF4P34130 210 aa7.26□□□□□ -1.25
SCFD1-218ENST00000556256 CLCN7P51798 805 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms