RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 CHD4Q14839 1912 aa17.28■□□□□ 0.36
VPS33B-205ENST00000556096 C6orf229H3BNL8 230 aa17.27■□□□□ 0.36
VPS33B-205ENST00000556096 DTNBO60941 627 aa17.27■□□□□ 0.36
VPS33B-205ENST00000556096 PCP11498 1178 aaKnown RBP17.27■□□□□ 0.36
VPS33B-205ENST00000556096 SGMS1Q86VZ5 419 aa17.27■□□□□ 0.36
VPS33B-205ENST00000556096 FAM184AQ8NB25 1140 aa17.27■□□□□ 0.36
VPS33B-205ENST00000556096 NKX2-3Q8TAU0 364 aa17.27■□□□□ 0.36
VPS33B-205ENST00000556096 NAP1L2Q9ULW6 460 aaPredicted RBP17.27■□□□□ 0.36
VPS33B-205ENST00000556096 HPS5Q9UPZ3 1129 aa17.27■□□□□ 0.36
VPS33B-205ENST00000556096 PTPDC1A2A3K4 754 aa17.27■□□□□ 0.35
VPS33B-205ENST00000556096 LDHCP07864 332 aa17.27■□□□□ 0.35
VPS33B-205ENST00000556096 INCENPQ9NQS7 918 aa17.27■□□□□ 0.35
VPS33B-205ENST00000556096 AATFQ9NY61 560 aaKnown RBP eCLIP17.27■□□□□ 0.35
VPS33B-205ENST00000556096 GOLGA8BA8MQT2 603 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 KDM4AO75164 1064 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 PPP4CP60510 307 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 MPNDQ8N594 471 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 TBC1D22AQ8WUA7 517 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 COA1Q9GZY4 146 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 GZF1Q9H116 711 aaPredicted RBP17.26■□□□□ 0.35
VPS33B-205ENST00000556096 TMX4Q9H1E5 349 aaPredicted RBP17.26■□□□□ 0.35
VPS33B-205ENST00000556096 NCOA5Q9HCD5 579 aaKnown RBP17.26■□□□□ 0.35
VPS33B-205ENST00000556096 JAG2Q9Y219 1238 aa17.26■□□□□ 0.35
VPS33B-205ENST00000556096 FAM205AQ6ZU69 1335 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 MINDY4BA8MYZ0 360 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 MBD3O95983 291 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 FGRP09769 529 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 SBK1Q52WX2 424 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 CTR9Q6PD62 1173 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 CDC37L1Q7L3B6 337 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 CERS3Q8IU89 383 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 C7orf43Q8WVR3 580 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 DDX11Q96FC9 970 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 LY9Q9HBG7 655 aa17.25■□□□□ 0.35
VPS33B-205ENST00000556096 DCAF8L1A6NGE4 600 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 IFIT3O14879 490 aaKnown RBP17.24■□□□□ 0.35
VPS33B-205ENST00000556096 BAG3O95817 575 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 TMEM67Q5HYA8 995 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 DPP8Q6V1X1 898 aaPredicted RBP17.24■□□□□ 0.35
VPS33B-205ENST00000556096 ARHGAP27Q6ZUM4 889 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 TMTC2Q8N394 836 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 DCP1AQ9NPI6 582 aaPredicted RBP17.24■□□□□ 0.35
VPS33B-205ENST00000556096 SNED1Q8TER0 1413 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 ARFGEF1Q9Y6D6 1849 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 RASSF7Q02833 373 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 SART3Q15020 963 aaKnown RBP17.24■□□□□ 0.35
VPS33B-205ENST00000556096 CSPP1Q1MSJ5 1256 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 APOA5Q6Q788 366 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 USP48Q86UV5 1035 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 RGS22Q8NE09 1264 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 ESR2Q92731 530 aa17.24■□□□□ 0.35
VPS33B-205ENST00000556096 FAM163AQ96GL9 167 aaPredicted RBP17.24■□□□□ 0.35
VPS33B-205ENST00000556096 USP17L12C9JPN9 530 aa17.23■□□□□ 0.35
VPS33B-205ENST00000556096 USP17L21D6R901 530 aa17.23■□□□□ 0.35
VPS33B-205ENST00000556096 GRIK5Q16478 980 aa17.23■□□□□ 0.35
VPS33B-205ENST00000556096 FOXD4L6Q3SYB3 417 aaPredicted RBP17.23■□□□□ 0.35
VPS33B-205ENST00000556096 FOXD4L3Q6VB84 417 aaPredicted RBP17.23■□□□□ 0.35
VPS33B-205ENST00000556096 GPT2Q8TD30 523 aa17.23■□□□□ 0.35
VPS33B-205ENST00000556096 ZC3H12CQ9C0D7 883 aaKnown RBP17.23■□□□□ 0.35
VPS33B-205ENST00000556096 ZSCAN16Q9H4T2 348 aaPredicted RBP17.23■□□□□ 0.35
VPS33B-205ENST00000556096 ARPP21Q9UBL0 812 aaPredicted RBP17.23■□□□□ 0.35
VPS33B-205ENST00000556096 CNPY2Q9Y2B0 182 aa17.23■□□□□ 0.35
VPS33B-205ENST00000556096 MROH7-TTC4A0A0A0MT08 1334 aa17.23■□□□□ 0.35
VPS33B-205ENST00000556096 H3BQV1 296 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 FDPSP14324 419 aaKnown RBP17.22■□□□□ 0.35
VPS33B-205ENST00000556096 NT5C2P49902 561 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 RRP12Q5JTH9 1297 aaKnown RBP17.22■□□□□ 0.35
VPS33B-205ENST00000556096 IFFO2Q5TF58 517 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 SLF2Q8IX21 1173 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 NOL10Q9BSC4 688 aaKnown RBP17.22■□□□□ 0.35
VPS33B-205ENST00000556096 TOMM22Q9NS69 142 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 MKRN1Q9UHC7 482 aaKnown RBP17.22■□□□□ 0.35
VPS33B-205ENST00000556096 ISY1Q9ULR0 285 aaKnown RBP17.22■□□□□ 0.35
VPS33B-205ENST00000556096 SUGT1Q9Y2Z0 365 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 NID2Q14112 1375 aa17.22■□□□□ 0.35
VPS33B-205ENST00000556096 ERICH2A1L162 156 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 CPLX1O14810 134 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 ZBTB43O43298 467 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 NCLP19338 710 aaKnown RBP17.21■□□□□ 0.35
VPS33B-205ENST00000556096 METAP2P50579 478 aaKnown RBP eCLIP17.21■□□□□ 0.35
VPS33B-205ENST00000556096 RCAN1P53805 252 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 DNM1Q05193 864 aaKnown RBP17.21■□□□□ 0.35
VPS33B-205ENST00000556096 NFXL1Q6ZNB6 911 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 EYA3Q99504 573 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 BAZ2AQ9UIF9 1905 aaKnown RBP17.21■□□□□ 0.35
VPS33B-205ENST00000556096 GPR75-ASB3A0A0A6YYF3 556 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 CCDC69A6NI79 296 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 RIMBP2O15034 1052 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 ORC4O43929 436 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 CDKL5O76039 1030 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 SLC3A2P08195 630 aaKnown RBP17.21■□□□□ 0.35
VPS33B-205ENST00000556096 RESTQ13127 1097 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 WTAPQ15007 396 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 MFSD14BQ5SR56 506 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 CC2D2BQ6DHV5 1058 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 RTFDC1Q9BY42 306 aaPredicted RBP17.21■□□□□ 0.35
VPS33B-205ENST00000556096 SENP2Q9HC62 589 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 GDPD2Q9HCC8 539 aa17.21■□□□□ 0.35
VPS33B-205ENST00000556096 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms