RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 FGAP02671 866 aa17.25■□□□□ 0.35
SHMT2-210ENST00000553950 NECTIN1Q15223 517 aa17.25■□□□□ 0.35
SHMT2-210ENST00000553950 SBK1Q52WX2 424 aa17.25■□□□□ 0.35
SHMT2-210ENST00000553950 APOBEC3FQ8IUX4 373 aaKnown RBP17.25■□□□□ 0.35
SHMT2-210ENST00000553950 TGFBRAP1Q8WUH2 860 aa17.25■□□□□ 0.35
SHMT2-210ENST00000553950 DHX36Q9H2U1 1008 aaKnown RBP17.25■□□□□ 0.35
SHMT2-210ENST00000553950 RNF41Q9H4P4 317 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-210ENST00000553950 HACL1Q9UJ83 578 aa17.25■□□□□ 0.35
SHMT2-210ENST00000553950 WNT10BO00744 389 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 FOXP2O15409 715 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 WDHD1O75717 1129 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-210ENST00000553950 HLA-DOAP06340 250 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 CREB3L3Q68CJ9 461 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 KCNB2Q92953 911 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 IL17RAQ96F46 866 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 OSBPL5Q9H0X9 879 aaPredicted RBP17.24■□□□□ 0.35
SHMT2-210ENST00000553950 ZNF287Q9HBT7 754 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 MCM9Q9NXL9 1143 aa17.24■□□□□ 0.35
SHMT2-210ENST00000553950 PITPNM2Q9BZ72 1349 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 SLC27A2O14975 620 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 PRKAB2O43741 272 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 PSMA5P28066 241 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 TSGA10IPQ3SY00 556 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 USP50Q70EL3 339 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-210ENST00000553950 TTC6Q86TZ1 520 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 FAM83AQ86UY5 434 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 MAPKAPK5Q8IW41 473 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 PRMT6Q96LA8 375 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-210ENST00000553950 TDRD3Q9H7E2 651 aaKnown RBP17.23■□□□□ 0.35
SHMT2-210ENST00000553950 CNNM2Q9H8M5 875 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 ZNF70Q9UC06 446 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-210ENST00000553950 ANAPC4Q9UJX5 808 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 ATRNL1Q5VV63 1379 aa17.23■□□□□ 0.35
SHMT2-210ENST00000553950 SIPA1L1O43166 1804 aa17.22■□□□□ 0.35
SHMT2-210ENST00000553950 POLR3DP05423 398 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-210ENST00000553950 HMGB1P09429 215 aaKnown RBP17.22■□□□□ 0.35
SHMT2-210ENST00000553950 PPARAQ07869 468 aa17.22■□□□□ 0.35
SHMT2-210ENST00000553950 TRDNQ13061 729 aa17.22■□□□□ 0.35
SHMT2-210ENST00000553950 PICALMQ13492 652 aa17.22■□□□□ 0.35
SHMT2-210ENST00000553950 TBC1D10BQ4KMP7 808 aaPredicted RBP17.22■□□□□ 0.35
SHMT2-210ENST00000553950 MKRN1Q9UHC7 482 aaKnown RBP17.22■□□□□ 0.35
SHMT2-210ENST00000553950 PPP2R3BQ9Y5P8 575 aa17.22■□□□□ 0.35
SHMT2-210ENST00000553950 CYP21A2P08686 494 aa17.21■□□□□ 0.35
SHMT2-210ENST00000553950 PNMA8AQ86V59 439 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-210ENST00000553950 HOOK2Q96ED9 719 aa17.21■□□□□ 0.35
SHMT2-210ENST00000553950 VEZTQ9HBM0 779 aa17.21■□□□□ 0.35
SHMT2-210ENST00000553950 UTRNP46939 3433 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 CLRN2A0PK11 232 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 USP17L12C9JPN9 530 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 USP17L21D6R901 530 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 EPHX2P34913 555 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 EPS15P42566 896 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 PDE4BQ07343 736 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 RABEP1Q15276 862 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 CTR9Q6PD62 1173 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 SAMD7Q7Z3H4 446 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 RALYLQ86SE5 291 aaKnown RBP17.2■□□□□ 0.34
SHMT2-210ENST00000553950 ZC3H15Q8WU90 426 aaKnown RBP17.2■□□□□ 0.34
SHMT2-210ENST00000553950 STAG1Q8WVM7 1258 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 FAM151AQ8WW52 585 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 TM6SF1Q9BZW5 370 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 EHD4Q9H223 541 aa17.2■□□□□ 0.34
SHMT2-210ENST00000553950 SHTN1A0MZ66 631 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 MINDY4BA8MYZ0 360 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 NBPF9Q3BBW0 867 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 AKNAD1Q5T1N1 836 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 RBM26Q5T8P6 1007 aaKnown RBP17.19■□□□□ 0.34
SHMT2-210ENST00000553950 C12orf60Q5U649 245 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 TRPM4Q8TD43 1214 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 TRIM34Q9BYJ4 488 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 KRT23Q9C075 422 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 SWAP70Q9UH65 585 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 PCDHAC2Q9Y5I4 1007 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 SNX14Q9Y5W7 946 aa17.19■□□□□ 0.34
SHMT2-210ENST00000553950 HAND2P61296 217 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 NFIAQ12857 509 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 MFSD6Q6ZSS7 791 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 ZSCAN29Q8IWY8 852 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-210ENST00000553950 NCOA7Q8NI08 942 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 DDX4Q9NQI0 724 aaKnown RBP17.18■□□□□ 0.34
SHMT2-210ENST00000553950 GGA3Q9NZ52 723 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 PI4KBQ9UBF8 816 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 FAM198AQ9UFP1 575 aa17.18■□□□□ 0.34
SHMT2-210ENST00000553950 POLR2AP24928 1970 aaKnown RBP17.18■□□□□ 0.34
SHMT2-210ENST00000553950 TCP10L2B9ZVM9 353 aa17.17■□□□□ 0.34
SHMT2-210ENST00000553950 TAF1DQ9H5J8 278 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-210ENST00000553950 SAP30BPQ9UHR5 308 aaKnown RBP17.17■□□□□ 0.34
SHMT2-210ENST00000553950 HERC5Q9UII4 1024 aaKnown RBP17.17■□□□□ 0.34
SHMT2-210ENST00000553950 SERPINB13Q9UIV8 391 aa17.17■□□□□ 0.34
SHMT2-210ENST00000553950 PALD1Q9ULE6 856 aa17.17■□□□□ 0.34
SHMT2-210ENST00000553950 WDR19Q8NEZ3 1342 aa17.17■□□□□ 0.34
SHMT2-210ENST00000553950 CNTNAP1P78357 1384 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 E7EWF7 191 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 ORC4O43929 436 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 ST18O60284 1047 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 VEGFAP15692 232 aaPredicted RBP17.16■□□□□ 0.34
SHMT2-210ENST00000553950 CACNB3P54284 484 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 TCP10Q12799 353 aa17.16■□□□□ 0.34
SHMT2-210ENST00000553950 ANGEL2Q5VTE6 544 aaKnown RBP17.16■□□□□ 0.34
SHMT2-210ENST00000553950 BLOC1S2Q6QNY1 142 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms