RNA–Protein interactions for RNA: ENST00000553823.5

NEK9-202, Transcript of NIMA related kinase 9, humanhuman

TSL 5

Gene NEK9, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-202ENST00000553823 NEK1Q96PY6 1258 aa13.96□□□□□ -0.17
NEK9-202ENST00000553823 UPF3BQ9BZI7 483 aaKnown RBP13.96□□□□□ -0.17
NEK9-202ENST00000553823 MKRN1Q9UHC7 482 aaKnown RBP13.96□□□□□ -0.17
NEK9-202ENST00000553823 CYP46A1Q9Y6A2 500 aa13.96□□□□□ -0.17
NEK9-202ENST00000553823 LAMB1P07942 1786 aa13.96□□□□□ -0.18
NEK9-202ENST00000553823 ZNF541Q9H0D2 1346 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 MINDY4BA8MYZ0 360 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 USP17L12C9JPN9 530 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 USP17L21D6R901 530 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 PPARAQ07869 468 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 SBK1Q52WX2 424 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 CTR9Q6PD62 1173 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 BLOC1S2Q6QNY1 142 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 STOX1Q6ZVD7 989 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 RUFY3Q7L099 469 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 MAPKAPK5Q8IW41 473 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 DPF2Q92785 391 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 NBPF3Q9H094 633 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 MCM9Q9NXL9 1143 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 RNF181Q9P0P0 153 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 ARPP21Q9UBL0 812 aaPredicted RBP13.95□□□□□ -0.18
NEK9-202ENST00000553823 ANAPC4Q9UJX5 808 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 PCDHAC2Q9Y5I4 1007 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 GJA3Q9Y6H8 435 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 TIAM2Q8IVF5 1701 aa13.95□□□□□ -0.18
NEK9-202ENST00000553823 SPDYE2BA6NHP3 402 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 WDHD1O75717 1129 aaPredicted RBP13.94□□□□□ -0.18
NEK9-202ENST00000553823 HMGB1P09429 215 aaKnown RBP13.94□□□□□ -0.18
NEK9-202ENST00000553823 SPDYE6P0CI01 402 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 GMPSP49915 693 aaPredicted RBP13.94□□□□□ -0.18
NEK9-202ENST00000553823 CTDSPL2Q05D32 466 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 DLGAP5Q15398 846 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 C9orf131Q5VYM1 1079 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 TBC1D10CQ8IV04 446 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 HSCBQ8IWL3 235 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 AMOTL1Q8IY63 956 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 MTMR14Q8NCE2 650 aa13.94□□□□□ -0.18
NEK9-202ENST00000553823 IPO9Q96P70 1041 aaKnown RBP13.94□□□□□ -0.18
NEK9-202ENST00000553823 FLT1P17948 1338 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 DDX60LQ5H9U9 1706 aaKnown RBP13.93□□□□□ -0.18
NEK9-202ENST00000553823 CYP2D7A0A087X1C5 515 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 CPA1P15085 419 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 RPS6KB1P23443 525 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 ZNF280AP59817 542 aaPredicted RBP13.93□□□□□ -0.18
NEK9-202ENST00000553823 TRDNQ13061 729 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 AKNAD1Q5T1N1 836 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 RALYLQ86SE5 291 aaKnown RBP13.93□□□□□ -0.18
NEK9-202ENST00000553823 GPC2Q8N158 579 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 NCOA7Q8NI08 942 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 STAG1Q8WVM7 1258 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 PRMT6Q96LA8 375 aaPredicted RBP13.93□□□□□ -0.18
NEK9-202ENST00000553823 TBC1D2Q9BYX2 928 aa13.93□□□□□ -0.18
NEK9-202ENST00000553823 RNF41Q9H4P4 317 aaPredicted RBP13.93□□□□□ -0.18
NEK9-202ENST00000553823 CD2BP2O95400 341 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 POLR3DP05423 398 aaPredicted RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 SLC3A2P08195 630 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 PCP11498 1178 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 MCM2P49736 904 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 PICALMQ13492 652 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 C12orf60Q5U649 245 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 MFSD6Q6ZSS7 791 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 DHX32Q7L7V1 743 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 TTC14Q96N46 770 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 IDI2Q9BXS1 227 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 TDRD3Q9H7E2 651 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 CNNM2Q9H8M5 875 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 MYOZ2Q9NPC6 264 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 DDX4Q9NQI0 724 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 PDRG1Q9NUG6 133 aa13.92□□□□□ -0.18
NEK9-202ENST00000553823 SAP30BPQ9UHR5 308 aaKnown RBP13.92□□□□□ -0.18
NEK9-202ENST00000553823 SHTN1A0MZ66 631 aa13.91□□□□□ -0.18
NEK9-202ENST00000553823 CYP2D6P10635 497 aa13.91□□□□□ -0.18
NEK9-202ENST00000553823 COL9A3Q14050 684 aaPredicted RBP13.91□□□□□ -0.18
NEK9-202ENST00000553823 MICALL2Q8IY33 904 aa13.91□□□□□ -0.18
NEK9-202ENST00000553823 MB21D2Q8IYB1 491 aaPredicted RBP13.91□□□□□ -0.18
NEK9-202ENST00000553823 ZBED3Q96IU2 234 aaPredicted RBP13.91□□□□□ -0.18
NEK9-202ENST00000553823 KRT23Q9C075 422 aa13.91□□□□□ -0.18
NEK9-202ENST00000553823 TMOD2Q9NZR1 351 aa13.91□□□□□ -0.18
NEK9-202ENST00000553823 DAXXQ9UER7 740 aaPredicted RBP13.91□□□□□ -0.18
NEK9-202ENST00000553823 CNOT7Q9UIV1 285 aaKnown RBP13.91□□□□□ -0.18
NEK9-202ENST00000553823 NEDD4P46934 1319 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 H7C1D1 291 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 SMIM22K7EJ46 135 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 MYO1BO43795 1136 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 FGRP09769 529 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 MCM5P33992 734 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 CACNB3P54284 484 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 EXOSC10Q01780 885 aaKnown RBP13.9□□□□□ -0.18
NEK9-202ENST00000553823 NFIAQ12857 509 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 STK11IPQ8N1F8 1099 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 OSBPL5Q9H0X9 879 aaPredicted RBP13.9□□□□□ -0.18
NEK9-202ENST00000553823 ALDH8A1Q9H2A2 487 aaPredicted RBP13.9□□□□□ -0.18
NEK9-202ENST00000553823 INCENPQ9NQS7 918 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 ZNF70Q9UC06 446 aaPredicted RBP13.9□□□□□ -0.18
NEK9-202ENST00000553823 TACC3Q9Y6A5 838 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 MYH8P13535 1937 aa13.9□□□□□ -0.18
NEK9-202ENST00000553823 WDR19Q8NEZ3 1342 aa13.9□□□□□ -0.19
NEK9-202ENST00000553823 ROBO3Q96MS0 1386 aa13.89□□□□□ -0.19
NEK9-202ENST00000553823 B4E1Z4 1266 aa13.89□□□□□ -0.19
NEK9-202ENST00000553823 K7ELQ4 463 aaPredicted RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms