RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 FAM9BQ8IZU0 186 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 SIL1Q9H173 461 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 PICK1Q9NRD5 415 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.35□□□□□ -0.59
SYNE2-209ENST00000553308 NR2E3Q9Y5X4 410 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 DOCK1Q14185 1865 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 PHIPQ8WWQ0 1821 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 ZNF521Q96K83 1311 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 SALL1Q9NSC2 1324 aa11.35□□□□□ -0.59
SYNE2-209ENST00000553308 TNPO2O14787 897 aaKnown RBP11.34□□□□□ -0.59
SYNE2-209ENST00000553308 ANP32CO43423 234 aa11.34□□□□□ -0.59
SYNE2-209ENST00000553308 SGPL1O95470 568 aa11.34□□□□□ -0.59
SYNE2-209ENST00000553308 INHAP05111 366 aa11.34□□□□□ -0.59
SYNE2-209ENST00000553308 FASTKD5Q7L8L6 764 aaKnown RBP11.34□□□□□ -0.59
SYNE2-209ENST00000553308 CCDC84Q86UT8 332 aaPredicted RBP11.34□□□□□ -0.59
SYNE2-209ENST00000553308 SSH1Q8WYL5 1049 aa11.34□□□□□ -0.59
SYNE2-209ENST00000553308 AFG3L2Q9Y4W6 797 aa11.34□□□□□ -0.59
SYNE2-209ENST00000553308 MYH2Q9UKX2 1941 aa11.34□□□□□ -0.59
SYNE2-209ENST00000553308 DDTLA6NHG4 134 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-209ENST00000553308 SOX1O00570 391 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-209ENST00000553308 ENTPD3O75355 529 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 ZSCAN29Q8IWY8 852 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-209ENST00000553308 SMCR8Q8TEV9 937 aaPredicted RBP11.33□□□□□ -0.6
SYNE2-209ENST00000553308 DEFB118Q96PH6 123 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 IDI2Q9BXS1 227 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 DDX4Q9NQI0 724 aaKnown RBP11.33□□□□□ -0.6
SYNE2-209ENST00000553308 GNL3LQ9NVN8 582 aaKnown RBP11.33□□□□□ -0.6
SYNE2-209ENST00000553308 TAOK2Q9UL54 1235 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 DENND2AQ9ULE3 1009 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 ALPK3Q96L96 1907 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 GAKO14976 1311 aa11.33□□□□□ -0.6
SYNE2-209ENST00000553308 TRIM75PA6NK02 468 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 EVI5O60447 810 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 CIAO1O76071 339 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 TFRCP02786 760 aaKnown RBP11.32□□□□□ -0.6
SYNE2-209ENST00000553308 ADORA1P30542 326 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 PICALMQ13492 652 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 IRF5Q13568 498 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 ANKRD13CQ8N6S4 541 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 PXYLP1Q8TE99 480 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 PAK6Q9NQU5 681 aaPredicted RBP11.32□□□□□ -0.6
SYNE2-209ENST00000553308 CEP126Q9P2H0 1117 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 SLC45A1Q9Y2W3 748 aa11.32□□□□□ -0.6
SYNE2-209ENST00000553308 LRRFIP2Q9Y608 721 aaKnown RBP11.32□□□□□ -0.6
SYNE2-209ENST00000553308 FAM196BA6NMK8 535 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 SEMA3EO15041 775 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 CTNND1O60716 968 aaKnown RBP11.31□□□□□ -0.6
SYNE2-209ENST00000553308 BTDP43251 543 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 MAP3K10Q02779 954 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 RASGRF1Q13972 1273 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 TREML2Q5T2D2 321 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 CCDC102BQ68D86 513 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 DZIP1Q86YF9 867 aaKnown RBP11.31□□□□□ -0.6
SYNE2-209ENST00000553308 DIS3LQ8TF46 1054 aaKnown RBP11.31□□□□□ -0.6
SYNE2-209ENST00000553308 LRCH3Q96II8 777 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 STAP2Q9UGK3 403 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 FBXO3Q9UK99 471 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 AGTPBP1Q9UPW5 1226 aa11.31□□□□□ -0.6
SYNE2-209ENST00000553308 PA2G4Q9UQ80 394 aaKnown RBP11.31□□□□□ -0.6
SYNE2-209ENST00000553308 A0A1W2PPC1 479 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 UBTFL1P0CB47 393 aaPredicted RBP11.3□□□□□ -0.6
SYNE2-209ENST00000553308 ZGPATQ8N5A5 531 aaKnown RBP11.3□□□□□ -0.6
SYNE2-209ENST00000553308 SLC17A8Q8NDX2 589 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 PAWRQ96IZ0 340 aaKnown RBP11.3□□□□□ -0.6
SYNE2-209ENST00000553308 CRISPLD2Q9H0B8 497 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 ABCF2Q9UG63 623 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 LOC285556D6RIA3 1793 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 SZT2Q5T011 3432 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 MROH7-TTC4A0A0A0MT08 1334 aa11.3□□□□□ -0.6
SYNE2-209ENST00000553308 IL15P40933 162 aaPredicted RBP11.29□□□□□ -0.6
SYNE2-209ENST00000553308 FAM110CQ1W6H9 321 aa11.29□□□□□ -0.6
SYNE2-209ENST00000553308 COA7Q96BR5 231 aa11.29□□□□□ -0.6
SYNE2-209ENST00000553308 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.29□□□□□ -0.6
SYNE2-209ENST00000553308 DOCK3Q8IZD9 2030 aa11.29□□□□□ -0.6
SYNE2-209ENST00000553308 ATAD5Q96QE3 1844 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 E9PSI1 815 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 DLL1O00548 723 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 ZBTB22O15209 634 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 RHBDL3P58872 404 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 MECOMQ03112 1051 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 TRIM32Q13049 653 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 SLF2Q8IX21 1173 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 C7orf61Q8IZ16 206 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 ZNF384Q8TF68 577 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 FAM163AQ96GL9 167 aaPredicted RBP11.28□□□□□ -0.6
SYNE2-209ENST00000553308 SMC4Q9NTJ3 1288 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 PNMA3Q9UL41 463 aa11.28□□□□□ -0.6
SYNE2-209ENST00000553308 PDS5AQ29RF7 1337 aaKnown RBP11.28□□□□□ -0.6
SYNE2-209ENST00000553308 DDX60LQ5H9U9 1706 aaKnown RBP11.27□□□□□ -0.61
SYNE2-209ENST00000553308 RANBP2P49792 3224 aaKnown RBP11.27□□□□□ -0.61
SYNE2-209ENST00000553308 GPR75-ASB3A0A0A6YYF3 556 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 HMGCRP04035 888 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 CAPN2P17655 700 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 HMGCS2P54868 508 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 TIMM10P62072 90 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 SPP2Q13103 211 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 ALDH1L2Q3SY69 923 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 NECAB2Q7Z6G3 386 aa11.27□□□□□ -0.61
SYNE2-209ENST00000553308 PROCA1Q8NCQ7 364 aaPredicted RBP11.27□□□□□ -0.61
SYNE2-209ENST00000553308 GDF15Q99988 308 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms