RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 SPHKAPQ2M3C7 1700 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.09□□□□□ -0.79
VPS13D-212ENST00000543766 ST20-MTHFSA0A0A6YYL1 179 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 HNRNPMP52272 730 aaKnown RBP eCLIP10.09□□□□□ -0.79
VPS13D-212ENST00000543766 TAF1CQ15572 869 aaPredicted RBP10.09□□□□□ -0.79
VPS13D-212ENST00000543766 KAZNQ674X7 775 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 ZSWIM4Q9H7M6 989 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 PIK3C2GO75747 1445 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 TRPM2O94759 1503 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 CYP1A2P05177 515 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 KIAA0753Q2KHM9 967 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 WASHC4Q2M389 1173 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 KIRREL3Q8IZU9 778 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 ZNF713Q8N859 430 aaPredicted RBP10.09□□□□□ -0.79
VPS13D-212ENST00000543766 MYO6Q9UM54 1294 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 ZNF652Q9Y2D9 606 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 PCDHB15Q9Y5E8 787 aa10.09□□□□□ -0.79
VPS13D-212ENST00000543766 SYNMO15061 1565 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 RNASEH2AO75792 299 aaKnown RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 GCFC2P16383 781 aaKnown RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 TNIP1Q15025 636 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 ZNF446Q9NWS9 450 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 MYOM1P52179 1685 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 ABCA6Q8N139 1617 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 SOS1Q07889 1333 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 SEMA3EO15041 775 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 HPDP32754 393 aaPredicted RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 EIF2B5Q13144 721 aaKnown RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 PLPP6Q8IY26 295 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 NLGN1Q8N2Q7 840 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 SMARCC2Q8TAQ2 1214 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 SUN5Q8TC36 379 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 RBM17Q96I25 401 aaKnown RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 BCL2L13Q9BXK5 485 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 FAM53CQ9NYF3 392 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 DDX41Q9UJV9 622 aaKnown RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 ADGRL1O94910 1474 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 BAG4O95429 457 aaKnown RBP10.08□□□□□ -0.8
VPS13D-212ENST00000543766 ALDH1B1P30837 517 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 LMAN1P49257 510 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 ODF2LQ9ULJ1 636 aa10.08□□□□□ -0.8
VPS13D-212ENST00000543766 CLTCL1P53675 1640 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 IL33O95760 270 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 FKBP5Q13451 457 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-212ENST00000543766 FILIP1LQ4L180 1135 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 FILIP1Q7Z7B0 1213 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 GFM2Q969S9 779 aaKnown RBP10.07□□□□□ -0.8
VPS13D-212ENST00000543766 NACC2Q96BF6 587 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 SPDL1Q96EA4 605 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 C2orf49Q9BVC5 232 aaPredicted RBP10.07□□□□□ -0.8
VPS13D-212ENST00000543766 FANCFQ9NPI8 374 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 LMBRD1Q9NUN5 540 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 SCINQ9Y6U3 715 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 DIP2CQ9Y2E4 1556 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 ATP7AQ04656 1500 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 KRT10P13645 584 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 KRI1Q8N9T8 703 aaKnown RBP10.07□□□□□ -0.8
VPS13D-212ENST00000543766 AK7Q96M32 723 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 GSDMAQ96QA5 445 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 ABCG4Q9H172 646 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 MROH1Q8NDA8 1641 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 SFSWAPQ12872 951 aaKnown RBP10.07□□□□□ -0.8
VPS13D-212ENST00000543766 WDR66Q8TBY9 1149 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 PIF1Q9H611 641 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 PDRG1Q9NUG6 133 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 PRAG1Q86YV5 1406 aa10.07□□□□□ -0.8
VPS13D-212ENST00000543766 GRXCR2A6NFK2 248 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 HSPA4P34932 840 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 NUCB1Q02818 461 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 TMED1Q13445 227 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 TCEAL1Q15170 157 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 SND1Q7KZF4 910 aaKnown RBP eCLIP10.06□□□□□ -0.8
VPS13D-212ENST00000543766 SLC7A5P1Q8MH63 180 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 CDHR1Q96JP9 859 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 SCYL1Q96KG9 808 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 IRX2Q9BZI1 471 aaPredicted RBP10.06□□□□□ -0.8
VPS13D-212ENST00000543766 SLC5A9Q2M3M2 681 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 ESCO1Q5FWF5 840 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 BRSK2Q8IWQ3 736 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 KIAA1210Q9ULL0 1709 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 PCNAP12004 261 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 ZNF16P17020 682 aaPredicted RBP10.06□□□□□ -0.8
VPS13D-212ENST00000543766 ODR4Q5SWX8 454 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 FBXW10Q5XX13 1052 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 ANKRD49Q8WVL7 239 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 SERPINA10Q9UK55 444 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 C3P01024 1663 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 SHPRHQ149N8 1683 aa10.06□□□□□ -0.8
VPS13D-212ENST00000543766 TRAPPC8Q9Y2L5 1435 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 MADDQ8WXG6 1647 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 ERC2O15083 957 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 XPOTO43592 962 aaKnown RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 SYCP1Q15431 976 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 NFE2L2Q16236 605 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 RTF1Q92541 710 aaKnown RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 NEK1Q96PY6 1258 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 CENPHQ9H3R5 247 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 ARGLU1Q9NWB6 273 aaPredicted RBP10.05□□□□□ -0.8
VPS13D-212ENST00000543766 A2MP01023 1474 aa10.05□□□□□ -0.8
VPS13D-212ENST00000543766 DIAPH1O60610 1272 aaKnown RBP10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms