RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 ZNF804BA4D1E1 1349 aa11.49□□□□□ -0.57
LMO3-227ENST00000541764 BCORQ6W2J9 1755 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 LOC102724428A0A0B4J2F2 783 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 BECN2A8MW95 431 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 B4E1Z4 1266 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 MYO1BO43795 1136 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 FMNL1O95466 1100 aaPredicted RBP11.48□□□□□ -0.57
LMO3-227ENST00000541764 CDC27P30260 824 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 IGHMBP2P38935 993 aaKnown RBP11.48□□□□□ -0.57
LMO3-227ENST00000541764 FOSBP53539 338 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 SIK1P57059 783 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 NLRP12P59046 1061 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 PTPAQ15257 358 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 DNTTIP2Q5QJE6 756 aaKnown RBP11.48□□□□□ -0.57
LMO3-227ENST00000541764 KRT40Q6A162 431 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 OTUD7BQ6GQQ9 843 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 SDF4Q9BRK5 362 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 NACAP1Q9BZK3 213 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 NAPBQ9H115 298 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 RNF41Q9H4P4 317 aaPredicted RBP11.48□□□□□ -0.57
LMO3-227ENST00000541764 IMPACTQ9P2X3 320 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 TUBE1Q9UJT0 475 aa11.48□□□□□ -0.57
LMO3-227ENST00000541764 A0A1B0GVL5 298 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 IKBKBO14920 756 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 CUTAO60888 179 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 IGSF3O75054 1194 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 ZNF202O95125 648 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 MBD4O95243 580 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 APPP05067 770 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 POLR3DP05423 398 aaPredicted RBP11.47□□□□□ -0.57
LMO3-227ENST00000541764 IARSP41252 1262 aaKnown RBP11.47□□□□□ -0.57
LMO3-227ENST00000541764 SF3B3Q15393 1217 aaKnown RBP11.47□□□□□ -0.57
LMO3-227ENST00000541764 DDB1Q16531 1140 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 TMEM67Q5HYA8 995 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 VPS37DQ86XT2 251 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 MPNDQ8N594 471 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 MAGEB6Q8N7X4 407 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 MAP3K14Q99558 947 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 NOL10Q9BSC4 688 aaKnown RBP11.47□□□□□ -0.57
LMO3-227ENST00000541764 OSBPL5Q9H0X9 879 aaPredicted RBP11.47□□□□□ -0.57
LMO3-227ENST00000541764 ZSWIM5Q9P217 1185 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 ZNF652Q9Y2D9 606 aa11.47□□□□□ -0.57
LMO3-227ENST00000541764 MYO5AQ9Y4I1 1855 aaKnown RBP11.47□□□□□ -0.57
LMO3-227ENST00000541764 CCDC196A0A1B0GTZ2 297 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 GOLGA8AA7E2F4 631 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 SMTNL1A8MU46 457 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 SLC3A2P08195 630 aaKnown RBP11.46□□□□□ -0.57
LMO3-227ENST00000541764 PCP11498 1178 aaKnown RBP11.46□□□□□ -0.57
LMO3-227ENST00000541764 ATP6V1AP38606 617 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 KCNJ6P48051 423 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 GSDMDP57764 484 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 SSRP1Q08945 709 aaKnown RBP11.46□□□□□ -0.57
LMO3-227ENST00000541764 CHAF1AQ13111 956 aaPredicted RBP11.46□□□□□ -0.57
LMO3-227ENST00000541764 UBE4AQ14139 1066 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 SART3Q15020 963 aaKnown RBP11.46□□□□□ -0.57
LMO3-227ENST00000541764 SYCP1Q15431 976 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 PDS5AQ29RF7 1337 aaKnown RBP11.46□□□□□ -0.57
LMO3-227ENST00000541764 MFSD6Q6ZSS7 791 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 LRRC8AQ8IWT6 810 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 DRC7Q8IY82 874 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 NKX2-3Q8TAU0 364 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.46□□□□□ -0.57
LMO3-227ENST00000541764 DENND2AQ9ULE3 1009 aa11.46□□□□□ -0.57
LMO3-227ENST00000541764 SPATA31A5Q5VU36 1347 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 SPATA31A7Q8IWB4 1347 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 IFIT3O14879 490 aaKnown RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 CTIFO43310 598 aaKnown RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 RANBP6O60518 1105 aaKnown RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 WDHD1O75717 1129 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 PFKFB1P16118 471 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 ITPK1Q13572 414 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 TRIM29Q14134 588 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 SLC10A5Q5PT55 438 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 RESP18Q5W5W9 173 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 C17orf53Q8N3J3 647 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 MARCH10Q8NA82 808 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 HELBQ8NG08 1087 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 CACTINQ8WUQ7 758 aaKnown RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 SYTL4Q96C24 671 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 FOXP1Q9H334 677 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 SEC31BQ9NQW1 1179 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 NRBP1Q9UHY1 535 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 SLC12A7Q9Y666 1083 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 TACC3Q9Y6A5 838 aa11.45□□□□□ -0.58
LMO3-227ENST00000541764 COL5A3P25940 1745 aaPredicted RBP11.45□□□□□ -0.58
LMO3-227ENST00000541764 CCDC69A6NI79 296 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 SEMA3EO15041 775 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 FGRP09769 529 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 NT5C2P49902 561 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 CHRNDQ07001 517 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 CCDC144BQ3MJ40 725 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 NFXL1Q6ZNB6 911 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 CCDC144CPQ8IYA2 1237 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 ARMT1Q9H993 441 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 SENP2Q9HC62 589 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 GNL3LQ9NVN8 582 aaKnown RBP11.44□□□□□ -0.58
LMO3-227ENST00000541764 PAXBP1Q9Y5B6 917 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 CHD4Q14839 1912 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 MMP1P03956 469 aa11.44□□□□□ -0.58
LMO3-227ENST00000541764 SYKP43405 635 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms