RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 VGLL2Q8N8G2 317 aa11.49□□□□□ -0.57
TRAF1-202ENST00000540010 CDK5RAP3Q96JB5 506 aa11.49□□□□□ -0.57
TRAF1-202ENST00000540010 ZFP91Q96JP5 570 aaPredicted RBP11.49□□□□□ -0.57
TRAF1-202ENST00000540010 TJP1Q07157 1748 aa11.49□□□□□ -0.57
TRAF1-202ENST00000540010 EIF3JO75822 258 aaKnown RBP11.48□□□□□ -0.57
TRAF1-202ENST00000540010 MBD4O95243 580 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 GYG1P46976 350 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 RC3H1Q5TC82 1133 aaKnown RBP11.48□□□□□ -0.57
TRAF1-202ENST00000540010 AOPEPQ8N6M6 819 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 ARHGEF1Q92888 912 aaKnown RBP11.48□□□□□ -0.57
TRAF1-202ENST00000540010 TANGO6Q9C0B7 1094 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 DNAI1Q9UI46 699 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 TUBGCP6Q96RT7 1819 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 ABCC12Q96J65 1359 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 ZNF445P59923 1031 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 COL9A3Q14050 684 aaPredicted RBP11.48□□□□□ -0.57
TRAF1-202ENST00000540010 STOX1Q6ZVD7 989 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 PRC1O43663 620 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 MARCKSP29966 332 aaPredicted RBP11.48□□□□□ -0.57
TRAF1-202ENST00000540010 GNG11P61952 73 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 RPS8P62241 208 aaKnown RBP11.48□□□□□ -0.57
TRAF1-202ENST00000540010 UBE3CQ15386 1083 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 MIGA1Q8NAN2 632 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 ANKIB1Q9P2G1 1089 aa11.48□□□□□ -0.57
TRAF1-202ENST00000540010 A0A0G2JLW4 131 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 NEMFO60524 1076 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 ARID4AP29374 1257 aaPredicted RBP11.47□□□□□ -0.57
TRAF1-202ENST00000540010 CCDC181Q5TID7 509 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 SSBP05455 408 aaKnown RBP eCLIP11.47□□□□□ -0.57
TRAF1-202ENST00000540010 CYP7A1P22680 504 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 ARMT1Q9H993 441 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 JAK2O60674 1132 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 GSDMDP57764 484 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 ATP2B2Q01814 1243 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 GTF3C6Q969F1 213 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 PAXBP1Q9Y5B6 917 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 NRAPQ86VF7 1730 aa11.47□□□□□ -0.57
TRAF1-202ENST00000540010 IFIT3O14879 490 aaKnown RBP11.46□□□□□ -0.57
TRAF1-202ENST00000540010 CASQ1P31415 396 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 STIM1Q13586 685 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 CNBD1Q8NA66 436 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 CELF1Q92879 486 aaKnown RBP11.46□□□□□ -0.57
TRAF1-202ENST00000540010 ZNF512BQ96KM6 892 aaPredicted RBP11.46□□□□□ -0.57
TRAF1-202ENST00000540010 RNF216Q9NWF9 866 aaPredicted RBP11.46□□□□□ -0.57
TRAF1-202ENST00000540010 KLF18A0A0U1RQI7 1052 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 KIAA1328Q86T90 577 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 ZSCAN16Q9H4T2 348 aaPredicted RBP11.46□□□□□ -0.57
TRAF1-202ENST00000540010 MTMR6Q9Y217 621 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 SLC4A4Q9Y6R1 1079 aa11.46□□□□□ -0.57
TRAF1-202ENST00000540010 FGFR2P21802 821 aa11.46□□□□□ -0.58
TRAF1-202ENST00000540010 DNA2P51530 1060 aa11.46□□□□□ -0.58
TRAF1-202ENST00000540010 IKQ13123 557 aaPredicted RBP11.46□□□□□ -0.58
TRAF1-202ENST00000540010 C3orf67Q6ZVT6 689 aa11.46□□□□□ -0.58
TRAF1-202ENST00000540010 RPGRQ92834 1020 aaKnown RBP11.46□□□□□ -0.58
TRAF1-202ENST00000540010 NCOA5Q9HCD5 579 aaKnown RBP11.46□□□□□ -0.58
TRAF1-202ENST00000540010 NWD2Q9ULI1 1742 aa11.46□□□□□ -0.58
TRAF1-202ENST00000540010 TRIM37O94972 964 aa11.46□□□□□ -0.58
TRAF1-202ENST00000540010 JAKMIP3Q5VZ66 844 aa11.46□□□□□ -0.58
TRAF1-202ENST00000540010 BSDC1Q9NW68 430 aaPredicted RBP11.46□□□□□ -0.58
TRAF1-202ENST00000540010 KIF5CO60282 957 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 UBASH3AP57075 661 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 SF3B3Q15393 1217 aaKnown RBP11.45□□□□□ -0.58
TRAF1-202ENST00000540010 CT47A1Q5JQC4 288 aaPredicted RBP11.45□□□□□ -0.58
TRAF1-202ENST00000540010 GPT2Q8TD30 523 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 ALDH8A1Q9H2A2 487 aaPredicted RBP11.45□□□□□ -0.58
TRAF1-202ENST00000540010 TFCP2L1Q9NZI6 479 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 SLC12A7Q9Y666 1083 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.45□□□□□ -0.58
TRAF1-202ENST00000540010 KRT18P05783 430 aaKnown RBP11.45□□□□□ -0.58
TRAF1-202ENST00000540010 IARSP41252 1262 aaKnown RBP11.45□□□□□ -0.58
TRAF1-202ENST00000540010 UBE4AQ14139 1066 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 CDC37L1Q7L3B6 337 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 GOLGA8AA7E2F4 631 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 ANKRD2Q9GZV1 360 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 MINPP1Q9UNW1 487 aa11.45□□□□□ -0.58
TRAF1-202ENST00000540010 NUP98P52948 1817 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 CAVIN2O95810 425 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 PTPDC1A2A3K4 754 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 RANBP6O60518 1105 aaKnown RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 SYKP43405 635 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 SCRN1Q12765 414 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 KRT27Q7Z3Y8 459 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 KRT222Q8N1A0 295 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 CCDC94Q9BW85 323 aaPredicted RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 CDR1P51861 262 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 ZFYVE27Q5T4F4 411 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 CCDC12Q8WUD4 166 aaPredicted RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 CRACR2AQ9BSW2 395 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 DENND2AQ9ULE3 1009 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 JAG2Q9Y219 1238 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 B4E1Z4 1266 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 PFKFB2O60825 505 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 BMS1Q14692 1282 aaKnown RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 ENOX2Q16206 610 aaKnown RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 TAF3Q5VWG9 929 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 NAA16Q6N069 864 aaPredicted RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 MRPS27Q92552 414 aaKnown RBP11.44□□□□□ -0.58
TRAF1-202ENST00000540010 WASF1Q92558 559 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 BCL2L12Q9HB09 334 aa11.44□□□□□ -0.58
TRAF1-202ENST00000540010 TCEAL9Q9UHQ7 104 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms