RNA–Protein interactions for RNA: ENST00000533309.5

TRIM3-213, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 1,647 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-213ENST00000533309 CDC42EP5Q6NZY7 148 aa18.94■□□□□ 0.62
TRIM3-213ENST00000533309 FLT1P17948 1338 aa18.94■□□□□ 0.62
TRIM3-213ENST00000533309 NEDD4P46934 1319 aa18.94■□□□□ 0.62
TRIM3-213ENST00000533309 WDHD1O75717 1129 aaPredicted RBP18.93■□□□□ 0.62
TRIM3-213ENST00000533309 TNIP1Q15025 636 aa18.93■□□□□ 0.62
TRIM3-213ENST00000533309 SBK1Q52WX2 424 aa18.93■□□□□ 0.62
TRIM3-213ENST00000533309 MAPKAPK5Q8IW41 473 aa18.93■□□□□ 0.62
TRIM3-213ENST00000533309 NKX2-3Q8TAU0 364 aa18.93■□□□□ 0.62
TRIM3-213ENST00000533309 TCEANC2Q96MN5 208 aa18.93■□□□□ 0.62
TRIM3-213ENST00000533309 ARPP21Q9UBL0 812 aaPredicted RBP18.93■□□□□ 0.62
TRIM3-213ENST00000533309 ZNF541Q9H0D2 1346 aa18.93■□□□□ 0.62
TRIM3-213ENST00000533309 K7ELQ4 463 aaPredicted RBP18.92■□□□□ 0.62
TRIM3-213ENST00000533309 USP17L8P0C7I0 530 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 AK2P54819 239 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 CFAP100Q494V2 611 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 AKNAD1Q5T1N1 836 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 MB21D2Q8IYB1 491 aaPredicted RBP18.92■□□□□ 0.62
TRIM3-213ENST00000533309 STAG1Q8WVM7 1258 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 PDRG1Q9NUG6 133 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 USP40Q9NVE5 1235 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 MCM9Q9NXL9 1143 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 MINDY4BA8MYZ0 360 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 HMGB1P09429 215 aaKnown RBP18.92■□□□□ 0.62
TRIM3-213ENST00000533309 CYP2D6P10635 497 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 RBM5P52756 815 aaKnown RBP eCLIP18.92■□□□□ 0.62
TRIM3-213ENST00000533309 DDX4Q9NQI0 724 aaKnown RBP18.92■□□□□ 0.62
TRIM3-213ENST00000533309 INCENPQ9NQS7 918 aa18.92■□□□□ 0.62
TRIM3-213ENST00000533309 EIF6P56537 245 aaKnown RBP18.91■□□□□ 0.62
TRIM3-213ENST00000533309 EXOSC10Q01780 885 aaKnown RBP18.91■□□□□ 0.62
TRIM3-213ENST00000533309 DHX32Q7L7V1 743 aaKnown RBP18.91■□□□□ 0.62
TRIM3-213ENST00000533309 NCOA7Q8NI08 942 aa18.91■□□□□ 0.62
TRIM3-213ENST00000533309 ALDH8A1Q9H2A2 487 aaPredicted RBP18.91■□□□□ 0.62
TRIM3-213ENST00000533309 ROBO3Q96MS0 1386 aa18.91■□□□□ 0.62
TRIM3-213ENST00000533309 SIPA1L1O43166 1804 aa18.91■□□□□ 0.62
TRIM3-213ENST00000533309 RPS12P25398 132 aaKnown RBP18.9■□□□□ 0.62
TRIM3-213ENST00000533309 ANTXR2P58335 489 aa18.9■□□□□ 0.62
TRIM3-213ENST00000533309 C12orf60Q5U649 245 aa18.9■□□□□ 0.62
TRIM3-213ENST00000533309 PRMT6Q96LA8 375 aaPredicted RBP18.9■□□□□ 0.62
TRIM3-213ENST00000533309 HDAC9Q9UKV0 1011 aa18.9■□□□□ 0.62
TRIM3-213ENST00000533309 SHTN1A0MZ66 631 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 SPDYE2BA6NHP3 402 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 FGRP09769 529 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 SPDYE6P0CI01 402 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 MCM2P49736 904 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 NFIAQ12857 509 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 TOB2Q14106 344 aaPredicted RBP18.89■□□□□ 0.62
TRIM3-213ENST00000533309 MFSD6Q6ZSS7 791 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 RALYLQ86SE5 291 aaKnown RBP18.89■□□□□ 0.62
TRIM3-213ENST00000533309 OGFOD1Q8N543 542 aa18.89■□□□□ 0.62
TRIM3-213ENST00000533309 SAP30BPQ9UHR5 308 aaKnown RBP18.89■□□□□ 0.62
TRIM3-213ENST00000533309 B4E1Z4 1266 aa18.89■□□□□ 0.61
TRIM3-213ENST00000533309 GMPSP49915 693 aaPredicted RBP18.89■□□□□ 0.61
TRIM3-213ENST00000533309 SLC4A8Q2Y0W8 1093 aa18.89■□□□□ 0.61
TRIM3-213ENST00000533309 NOL8Q76FK4 1167 aaKnown RBP18.89■□□□□ 0.61
TRIM3-213ENST00000533309 MTMR14Q8NCE2 650 aa18.89■□□□□ 0.61
TRIM3-213ENST00000533309 ZBED3Q96IU2 234 aaPredicted RBP18.89■□□□□ 0.61
TRIM3-213ENST00000533309 LRRC2Q9BYS8 371 aa18.89■□□□□ 0.61
TRIM3-213ENST00000533309 AGXT2Q9BYV1 514 aa18.89■□□□□ 0.61
TRIM3-213ENST00000533309 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.89■□□□□ 0.61
TRIM3-213ENST00000533309 MYH8P13535 1937 aa18.89■□□□□ 0.61
TRIM3-213ENST00000533309 CACNB3P54284 484 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 ZNF280AP59817 542 aaPredicted RBP18.88■□□□□ 0.61
TRIM3-213ENST00000533309 TRDNQ13061 729 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 PICALMQ13492 652 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 CYB5R4Q7L1T6 521 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 CHST3Q7LGC8 479 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 STK11IPQ8N1F8 1099 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 TMX3Q96JJ7 454 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 IDI2Q9BXS1 227 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 RNF41Q9H4P4 317 aaPredicted RBP18.88■□□□□ 0.61
TRIM3-213ENST00000533309 TDRD3Q9H7E2 651 aaKnown RBP18.88■□□□□ 0.61
TRIM3-213ENST00000533309 CNNM2Q9H8M5 875 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 WDR19Q8NEZ3 1342 aa18.88■□□□□ 0.61
TRIM3-213ENST00000533309 MCM5P33992 734 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 PLCD1P51178 756 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 DLGAP5Q15398 846 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 Q6ZUG5 572 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 DPF2Q92785 391 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 LARP6Q9BRS8 491 aaKnown RBP18.87■□□□□ 0.61
TRIM3-213ENST00000533309 OSBPL5Q9H0X9 879 aaPredicted RBP18.87■□□□□ 0.61
TRIM3-213ENST00000533309 RNF181Q9P0P0 153 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 FAM198AQ9UFP1 575 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 GJA3Q9Y6H8 435 aa18.87■□□□□ 0.61
TRIM3-213ENST00000533309 PRC1O43663 620 aa18.86■□□□□ 0.61
TRIM3-213ENST00000533309 PCP11498 1178 aaKnown RBP18.86■□□□□ 0.61
TRIM3-213ENST00000533309 FBXL16Q8N461 479 aa18.86■□□□□ 0.61
TRIM3-213ENST00000533309 KRT23Q9C075 422 aa18.86■□□□□ 0.61
TRIM3-213ENST00000533309 DAXXQ9UER7 740 aaPredicted RBP18.86■□□□□ 0.61
TRIM3-213ENST00000533309 ORC4O43929 436 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 KDM4AO75164 1064 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 NPM3O75607 178 aaKnown RBP18.85■□□□□ 0.61
TRIM3-213ENST00000533309 LARGE1O95461 756 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 POLR3DP05423 398 aaPredicted RBP18.85■□□□□ 0.61
TRIM3-213ENST00000533309 MMP14P50281 582 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 DYNLL2Q96FJ2 89 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 MYOZ2Q9NPC6 264 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 ZSWIM5Q9P217 1185 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 TPCN1Q9ULQ1 816 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 LIMCH1Q9UPQ0 1083 aa18.85■□□□□ 0.61
TRIM3-213ENST00000533309 PRDM1O75626 825 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms