RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 ZAP70P43403 619 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 APLP1P51693 650 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 PDE1AP54750 535 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 HTRA3P83110 453 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 CDC37L1Q7L3B6 337 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 ZDHHC15Q96MV8 337 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 BOLA2Q9H3K6 86 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 OSBPL3Q9H4L5 887 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 STAP2Q9UGK3 403 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 DAGLAQ9Y4D2 1042 aa9.36□□□□□ -0.91
LIMCH1-222ENST00000515847 DOCK2Q92608 1830 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 GAKO14976 1311 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 EIF5BO60841 1220 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 MFAP1P55081 439 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 MECOMQ03112 1051 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 FKBP1CQ5VVH2 108 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 TSHZ3Q63HK5 1081 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 APOBEC3HQ6NTF7 200 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 CASC1Q6TDU7 716 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 AMOTL1Q8IY63 956 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 ZNF384Q8TF68 577 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 EVI5LQ96CN4 794 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 CDCA5Q96FF9 252 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 FSD1Q9BTV5 496 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 TDRD3Q9H7E2 651 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 ZNF408Q9H9D4 720 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 VEZTQ9HBM0 779 aa9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 PIH1D3Q9NQM4 214 aaKnown RBP9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 ZNF70Q9UC06 446 aaPredicted RBP9.35□□□□□ -0.91
LIMCH1-222ENST00000515847 CELF2O95319 508 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 CACNB3P54284 484 aa9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 PRAMEF18Q5VWM3 479 aa9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 KBTBD3Q8NAB2 608 aa9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 OTUD7AQ8TE49 926 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 NSUN4Q96CB9 384 aaKnown RBP9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 ANTXR1Q9H6X2 564 aa9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 RPAP1Q9BWH6 1393 aaPredicted RBP9.34□□□□□ -0.91
LIMCH1-222ENST00000515847 TMEM88BA6NKF7 163 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 TRIM6-TRIM34B2RNG4 842 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 ST18O60284 1047 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 GNAT2P19087 354 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 CYP7A1P22680 504 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 UBE3CQ15386 1083 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 SLC9C2Q5TAH2 1124 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 CST9Q5W186 159 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 PI4K2BQ8TCG2 481 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 AIDAQ96BJ3 306 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 EDC3Q96F86 508 aaKnown RBP9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 DEFB129Q9H1M3 183 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 TAOK2Q9UL54 1235 aa9.33□□□□□ -0.92
LIMCH1-222ENST00000515847 SALL3Q9BXA9 1300 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 PAPPA2Q9BXP8 1791 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 GPR75-ASB3A0A0A6YYF3 556 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 TCP10L2B9ZVM9 353 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 PDE6AP16499 860 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 BTDP43251 543 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 SUPT20HL1Q3ZLR7 823 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 CDC42EP5Q6NZY7 148 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 FAM83AQ86UY5 434 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 MAGEB6Q8N7X4 407 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 RUFY2Q8WXA3 655 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 APPBP2Q92624 585 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 CRNKL1Q9BZJ0 848 aaKnown RBP9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 DIAPH3Q9NSV4 1193 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 CNTNAP1P78357 1384 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 SSC5DA1L4H1 1573 aa9.32□□□□□ -0.92
LIMCH1-222ENST00000515847 MYH7P12883 1935 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 MAGEB6P1A0A0J9YX57 407 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 ENTPD3O75355 529 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 HLA-DOAP06340 250 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 ADD2P35612 726 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 FKBP1BP68106 108 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 NFIAQ12857 509 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 RASA3Q14644 834 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 TTC22Q5TAA0 569 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 DCAF15Q66K64 600 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 ADGRA1Q86SQ6 560 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 PLEKHM2Q8IWE5 1019 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 CDAN1Q8IWY9 1227 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 TEX11Q8IYF3 940 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 RILPL2Q969X0 211 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 TRIM34Q9BYJ4 488 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 NACAP1Q9BZK3 213 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 TMEM39BQ9GZU3 492 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 DHX36Q9H2U1 1008 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 USP40Q9NVE5 1235 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 ABT1Q9ULW3 272 aaKnown RBP9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 COL2A1P02458 1487 aaPredicted RBP9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 RAD50Q92878 1312 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 ZNF532Q9HCE3 1301 aa9.31□□□□□ -0.92
LIMCH1-222ENST00000515847 PCNTO95613 3336 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 RNF113AO15541 343 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 PPP1R12BO60237 982 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 USP5P45974 858 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 PPP4CP60510 307 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 MOB2Q70IA6 237 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 TEPSINQ96N21 525 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 IDI2Q9BXS1 227 aa9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 GBA2Q9HCG7 927 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-222ENST00000515847 FAM198AQ9UFP1 575 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms