RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 LDHBP07195 334 aaKnown RBP25.44■■□□□ 1.66
SQSTM1-215ENST00000514093 PTPRAP18433 802 aa25.44■■□□□ 1.66
SQSTM1-215ENST00000514093 PICK1Q9NRD5 415 aa25.44■■□□□ 1.66
SQSTM1-215ENST00000514093 AFG3L2Q9Y4W6 797 aa25.44■■□□□ 1.66
SQSTM1-215ENST00000514093 COL6A3P12111 3177 aa25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 RGS3P49796 1198 aa25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 PXYLP1Q8TE99 480 aa25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 PAWRQ96IZ0 340 aaKnown RBP25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 USP44Q9H0E7 712 aa25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 MYH13Q9UKX3 1938 aa25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 ATRNL1Q5VV63 1379 aa25.43■■□□□ 1.66
SQSTM1-215ENST00000514093 A0A1W2PPC1 479 aa25.42■■□□□ 1.66
SQSTM1-215ENST00000514093 RFX5P48382 616 aaPredicted RBP25.42■■□□□ 1.66
SQSTM1-215ENST00000514093 SH3BP5LQ7L8J4 393 aa25.42■■□□□ 1.66
SQSTM1-215ENST00000514093 SMCR8Q8TEV9 937 aaPredicted RBP25.42■■□□□ 1.66
SQSTM1-215ENST00000514093 LAMA3Q16787 3333 aa25.42■■□□□ 1.66
SQSTM1-215ENST00000514093 CCDC84Q86UT8 332 aaPredicted RBP25.41■■□□□ 1.66
SQSTM1-215ENST00000514093 ZSCAN29Q8IWY8 852 aaPredicted RBP25.41■■□□□ 1.66
SQSTM1-215ENST00000514093 MRPL50Q8N5N7 158 aaKnown RBP25.41■■□□□ 1.66
SQSTM1-215ENST00000514093 DIS3LQ8TF46 1054 aaKnown RBP25.41■■□□□ 1.66
SQSTM1-215ENST00000514093 TRIM75PA6NK02 468 aa25.4■■□□□ 1.66
SQSTM1-215ENST00000514093 IRF5Q13568 498 aa25.4■■□□□ 1.66
SQSTM1-215ENST00000514093 ATG9AQ7Z3C6 839 aa25.4■■□□□ 1.66
SQSTM1-215ENST00000514093 PAK6Q9NQU5 681 aaPredicted RBP25.4■■□□□ 1.66
SQSTM1-215ENST00000514093 LRRFIP2Q9Y608 721 aaKnown RBP25.4■■□□□ 1.66
SQSTM1-215ENST00000514093 ANKRD13CQ8N6S4 541 aa25.39■■□□□ 1.66
SQSTM1-215ENST00000514093 CRISPLD2Q9H0B8 497 aa25.39■■□□□ 1.66
SQSTM1-215ENST00000514093 SIL1Q9H173 461 aa25.39■■□□□ 1.66
SQSTM1-215ENST00000514093 SLC45A1Q9Y2W3 748 aa25.39■■□□□ 1.66
SQSTM1-215ENST00000514093 DDTLA6NHG4 134 aaPredicted RBP25.38■■□□□ 1.65
SQSTM1-215ENST00000514093 ENTPD3O75355 529 aa25.37■■□□□ 1.65
SQSTM1-215ENST00000514093 ATP2B3Q16720 1220 aa25.37■■□□□ 1.65
SQSTM1-215ENST00000514093 COA7Q96BR5 231 aa25.37■■□□□ 1.65
SQSTM1-215ENST00000514093 IDI2Q9BXS1 227 aa25.37■■□□□ 1.65
SQSTM1-215ENST00000514093 GNL3LQ9NVN8 582 aaKnown RBP25.37■■□□□ 1.65
SQSTM1-215ENST00000514093 ZMYND8Q9ULU4 1186 aaPredicted RBP25.37■■□□□ 1.65
SQSTM1-215ENST00000514093 DOCK2Q92608 1830 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 PHKA1P46020 1223 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 PICALMQ13492 652 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 TREML2Q5T2D2 321 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 NECAB2Q7Z6G3 386 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 C7orf61Q8IZ16 206 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.36■■□□□ 1.659e-7■■■■□ 21.6
SQSTM1-215ENST00000514093 DDX4Q9NQI0 724 aaKnown RBP25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 SALL1Q9NSC2 1324 aa25.36■■□□□ 1.65
SQSTM1-215ENST00000514093 A0A0C4DFX4 3053 aa25.35■■□□□ 1.65
SQSTM1-215ENST00000514093 MAP3K10Q02779 954 aa25.35■■□□□ 1.65
SQSTM1-215ENST00000514093 DENND2AQ9ULE3 1009 aa25.35■■□□□ 1.65
SQSTM1-215ENST00000514093 ALPK3Q96L96 1907 aa25.35■■□□□ 1.65
SQSTM1-215ENST00000514093 CTNND1O60716 968 aaKnown RBP25.34■■□□□ 1.65
SQSTM1-215ENST00000514093 GDF15Q99988 308 aa25.34■■□□□ 1.65
SQSTM1-215ENST00000514093 CEP126Q9P2H0 1117 aa25.34■■□□□ 1.65
SQSTM1-215ENST00000514093 AGTPBP1Q9UPW5 1226 aa25.34■■□□□ 1.65
SQSTM1-215ENST00000514093 DOCK3Q8IZD9 2030 aa25.34■■□□□ 1.65
SQSTM1-215ENST00000514093 PTPRFP10586 1907 aa25.33■■□□□ 1.65
SQSTM1-215ENST00000514093 PTPRCP08575 1304 aa25.33■■□□□ 1.64
SQSTM1-215ENST00000514093 FAM196BA6NMK8 535 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 CAPN2P17655 700 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 ADORA1P30542 326 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 TRIM32Q13049 653 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 Q7L0L9 218 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 ABCF2Q9UG63 623 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 PHIPQ8WWQ0 1821 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 GAKO14976 1311 aa25.32■■□□□ 1.64
SQSTM1-215ENST00000514093 RFX7Q2KHR2 1363 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 MYH2Q9UKX2 1941 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 SYN1P17600 705 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 BTDP43251 543 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 FAM110CQ1W6H9 321 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 DZIP1Q86YF9 867 aaKnown RBP25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 FAM9BQ8IZU0 186 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 DEFB123Q8N688 67 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 SSH1Q8WYL5 1049 aa25.31■■□□□ 1.64
SQSTM1-215ENST00000514093 DOCK1Q14185 1865 aa25.3■■□□□ 1.64
SQSTM1-215ENST00000514093 BMP8BP34820 402 aa25.3■■□□□ 1.64
SQSTM1-215ENST00000514093 SEMA3EO15041 775 aa25.29■■□□□ 1.64
SQSTM1-215ENST00000514093 CCDC102BQ68D86 513 aa25.29■■□□□ 1.64
SQSTM1-215ENST00000514093 PNMA3Q9UL41 463 aa25.29■■□□□ 1.64
SQSTM1-215ENST00000514093 CIAO1O76071 339 aa25.28■■□□□ 1.64
SQSTM1-215ENST00000514093 HMGCRP04035 888 aa25.28■■□□□ 1.64
SQSTM1-215ENST00000514093 SPP2Q13103 211 aa25.28■■□□□ 1.64
SQSTM1-215ENST00000514093 ZGPATQ8N5A5 531 aaKnown RBP25.28■■□□□ 1.64
SQSTM1-215ENST00000514093 NBPF3Q9H094 633 aa25.28■■□□□ 1.64
SQSTM1-215ENST00000514093 PA2G4Q9UQ80 394 aaKnown RBP25.28■■□□□ 1.64
SQSTM1-215ENST00000514093 MNX1P50219 401 aaPredicted RBP25.27■■□□□ 1.64
SQSTM1-215ENST00000514093 RASGRF1Q13972 1273 aa25.27■■□□□ 1.64
SQSTM1-215ENST00000514093 ANKLE1Q8NAG6 615 aa25.27■■□□□ 1.64
SQSTM1-215ENST00000514093 XPO5Q9HAV4 1204 aaKnown RBP eCLIP25.27■■□□□ 1.646e-7■□□□□ 10.6
SQSTM1-215ENST00000514093 HMX1Q9NP08 348 aaPredicted RBP25.27■■□□□ 1.64
SQSTM1-215ENST00000514093 GJD2Q9UKL4 321 aa25.27■■□□□ 1.64
SQSTM1-215ENST00000514093 MAGEA10P43363 369 aaPredicted RBP25.26■■□□□ 1.63
SQSTM1-215ENST00000514093 HMGCS2P54868 508 aa25.26■■□□□ 1.63
SQSTM1-215ENST00000514093 PROCA1Q8NCQ7 364 aaPredicted RBP25.26■■□□□ 1.63
SQSTM1-215ENST00000514093 FAM163AQ96GL9 167 aaPredicted RBP25.26■■□□□ 1.63
SQSTM1-215ENST00000514093 RPTORQ8N122 1335 aa25.26■■□□□ 1.63
SQSTM1-215ENST00000514093 IL15P40933 162 aaPredicted RBP25.25■■□□□ 1.63
SQSTM1-215ENST00000514093 TIMM10P62072 90 aa25.25■■□□□ 1.63
SQSTM1-215ENST00000514093 SLF2Q8IX21 1173 aa25.25■■□□□ 1.63
SQSTM1-215ENST00000514093 C11orf49Q9H6J7 331 aa25.25■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms