RNA–Protein interactions for RNA: ENST00000498223.3

CTTN-208, Transcript of cortactin, human

TSL 3

Gene CTTN, Length 523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTTN-208	ENST00000498223	TGFBRAP1	Q8WUH2	860 aa		13.73	□□□□□ -0.21
CTTN-208	ENST00000498223	SCAF8	Q9UPN6	1271 aa	Known RBP	13.73	□□□□□ -0.21
CTTN-208	ENST00000498223	SLC4A4	Q9Y6R1	1079 aa		13.73	□□□□□ -0.21
CTTN-208	ENST00000498223	TNFAIP1	Q13829	316 aa		13.72	□□□□□ -0.21
CTTN-208	ENST00000498223	MAPKAPK5	Q8IW41	473 aa		13.72	□□□□□ -0.21
CTTN-208	ENST00000498223	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.72	□□□□□ -0.21
CTTN-208	ENST00000498223	ZC3H15	Q8WU90	426 aa	Known RBP	13.72	□□□□□ -0.21
CTTN-208	ENST00000498223	RIOK1	Q9BRS2	568 aa	Known RBP	13.72	□□□□□ -0.21
CTTN-208	ENST00000498223	CCDC171	Q6TFL3	1326 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	RASSF10	A6NK89	507 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	GNAT2	P19087	354 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	RHBDL3	P58872	404 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	KIAA1211	Q6ZU35	1233 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	KRT26	Q7Z3Y9	468 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	USP48	Q86UV5	1035 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	SDR42E1	Q8WUS8	393 aa		13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	STRBP	Q96SI9	672 aa	Known RBP	13.71	□□□□□ -0.21
CTTN-208	ENST00000498223	LAMB1	P07942	1786 aa		13.71	□□□□□ -0.22
CTTN-208	ENST00000498223	RAD50	Q92878	1312 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	PITPNM2	Q9BZ72	1349 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	PRKAB2	O43741	272 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	VEGFB	P49765	207 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	NFIA	Q12857	509 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	AMOTL1	Q8IY63	956 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	NACAP1	Q9BZK3	213 aa		13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	SAP30BP	Q9UHR5	308 aa	Known RBP	13.7	□□□□□ -0.22
CTTN-208	ENST00000498223	PATL2	C9JE40	543 aa	Known RBP	13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	ADM5	C9JUS6	153 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	WDHD1	O75717	1129 aa	Predicted RBP	13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	POLR3D	P05423	398 aa	Predicted RBP	13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	TDO2	P48775	406 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	RASA3	Q14644	834 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	SLC4A8	Q2Y0W8	1093 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	DEFB115	Q30KQ5	88 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	FKBP1C	Q5VVH2	108 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	CDC37L1	Q7L3B6	337 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	ZNF589	Q86UQ0	364 aa	Predicted RBP	13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	TNS4	Q8IZW8	715 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	FAM151A	Q8WW52	585 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	ESYT1	Q9BSJ8	1104 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	IDI2	Q9BXS1	227 aa		13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	ABT1	Q9ULW3	272 aa	Known RBP	13.69	□□□□□ -0.22
CTTN-208	ENST00000498223	SGSM2	O43147	1006 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	ENTPD3	O75355	529 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	FAM83A	Q86UY5	434 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	TRIM34	Q9BYJ4	488 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	TMEM39B	Q9GZU3	492 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	NAPB	Q9H115	298 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	DEFB129	Q9H1M3	183 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	DDX4	Q9NQI0	724 aa	Known RBP	13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	ATP8A2	Q9NTI2	1148 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	MCM9	Q9NXL9	1143 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	FAM198A	Q9UFP1	575 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	PGAP2	Q9UHJ9	254 aa		13.68	□□□□□ -0.22
CTTN-208	ENST00000498223	FLT1	P17948	1338 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	TRAF5	O00463	557 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	HLA-DOA	P06340	250 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	PRAMEF18	Q5VWM3	479 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	ZFPM1	Q8IX07	1006 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	IFNL3	Q8IZI9	196 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	ZNF408	Q9H9D4	720 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	DCP1A	Q9NPI6	582 aa	Predicted RBP	13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	ANO2	Q9NQ90	1003 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	PALD1	Q9ULE6	856 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	PPP2R3B	Q9Y5P8	575 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	LAMA4	Q16363	1823 aa		13.67	□□□□□ -0.22
CTTN-208	ENST00000498223	GSG1L2	A8MUP6	293 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	MINDY4B	A8MYZ0	360 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	HSPD1	P10809	573 aa	Known RBP	13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	NF2	P35240	595 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	FMR1	Q06787	632 aa	Known RBP eCLIP	13.66	□□□□□ -0.22	6e-7	■■■■□ 24.7
CTTN-208	ENST00000498223	VPS53	Q5VIR6	699 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	HOOK2	Q96ED9	719 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	IL25	Q9H293	177 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	DHX36	Q9H2U1	1008 aa	Known RBP	13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	WBP1L	Q9NX94	342 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	DDX60L	Q5H9U9	1706 aa	Known RBP	13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	ATAD5	Q96QE3	1844 aa		13.66	□□□□□ -0.22
CTTN-208	ENST00000498223	WDR33	Q9C0J8	1336 aa	Known RBP	13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	USP17L12	C9JPN9	530 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	USP17L21	D6R901	530 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	FOXN1	O15353	648 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	EIF5B	O60841	1220 aa	Known RBP	13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	NPM3	O75607	178 aa	Known RBP	13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	REC8	O95072	547 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	TTLL12	Q14166	644 aa	Predicted RBP	13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	SUPT20HL1	Q3ZLR7	823 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	NBPF12	Q5TAG4	269 aa	Predicted RBP	13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	CST9	Q5W186	159 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	GIMAP6	Q6P9H5	292 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	DLK2	Q6UY11	383 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	TTC6	Q86TZ1	520 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	CDCA5	Q96FF9	252 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	CSRNP1	Q96S65	589 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	DSCC1	Q9BVC3	393 aa		13.65	□□□□□ -0.22
CTTN-208	ENST00000498223	SIPA1L1	O43166	1804 aa		13.64	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms