RNA–Protein interactions for RNA: ENST00000491128.5

SMPD4-219, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 2,570 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-219ENST00000491128 CACNB3P54284 484 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 SLC44A5Q8NCS7 719 aa16.41■□□□□ 0.22
SMPD4-219ENST00000491128 NMT2O60551 498 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 RAD17O75943 681 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 PLCD1P51178 756 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 GSTO1P78417 241 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 TBC1D22AQ8WUA7 517 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 GOLGA8BA8MQT2 603 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 IFIT3O14879 490 aaKnown RBP16.4■□□□□ 0.22
SMPD4-219ENST00000491128 CTDNEP1O95476 244 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 BAG3O95817 575 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 NUCB2P80303 420 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 TMEM67Q5HYA8 995 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 TEX11Q8IYF3 940 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 STAG1Q8WVM7 1258 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 NOL10Q9BSC4 688 aaKnown RBP16.4■□□□□ 0.22
SMPD4-219ENST00000491128 AGXT2Q9BYV1 514 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 LAMA4Q16363 1823 aa16.4■□□□□ 0.22
SMPD4-219ENST00000491128 VPS37CA5D8V6 355 aaPredicted RBP16.39■□□□□ 0.22
SMPD4-219ENST00000491128 NFXL1Q6ZNB6 911 aa16.39■□□□□ 0.22
SMPD4-219ENST00000491128 PODNQ7Z5L7 613 aa16.39■□□□□ 0.22
SMPD4-219ENST00000491128 MICU3Q86XE3 530 aa16.39■□□□□ 0.22
SMPD4-219ENST00000491128 IGDCC4Q8TDY8 1250 aa16.39■□□□□ 0.22
SMPD4-219ENST00000491128 PIM2Q9P1W9 311 aa16.39■□□□□ 0.22
SMPD4-219ENST00000491128 BAZ2AQ9UIF9 1905 aaKnown RBP16.39■□□□□ 0.21
SMPD4-219ENST00000491128 RBM5P52756 815 aaKnown RBP eCLIP16.39■□□□□ 0.21
SMPD4-219ENST00000491128 RHBDL3P58872 404 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 KIAA2012Q0VF49 1180 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 MCTP1Q6DN14 999 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 FERMT3Q86UX7 667 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 NLGN2Q8NFZ4 835 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 BCS1LQ9Y276 419 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 ZMYM6O95789 1325 aa16.39■□□□□ 0.21
SMPD4-219ENST00000491128 GPR75-ASB3A0A0A6YYF3 556 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 SH2B2O14492 632 aaPredicted RBP16.38■□□□□ 0.21
SMPD4-219ENST00000491128 PFKFB2O60825 505 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 LDHCP07864 332 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 CCDC93Q567U6 631 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 LARGE2Q8N3Y3 721 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 GDPD2Q9HCC8 539 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 ANGEL1Q9UNK9 670 aaKnown RBP16.38■□□□□ 0.21
SMPD4-219ENST00000491128 HPS5Q9UPZ3 1129 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 BAG4O95429 457 aaKnown RBP16.38■□□□□ 0.21
SMPD4-219ENST00000491128 BRD1O95696 1058 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 ADD1P35611 737 aaKnown RBP16.38■□□□□ 0.21
SMPD4-219ENST00000491128 LY9Q9HBG7 655 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 ATP8A2Q9NTI2 1148 aa16.38■□□□□ 0.21
SMPD4-219ENST00000491128 MKRN1Q9UHC7 482 aaKnown RBP16.38■□□□□ 0.21
SMPD4-219ENST00000491128 ZBTB12Q9Y330 459 aaPredicted RBP16.38■□□□□ 0.21
SMPD4-219ENST00000491128 STX6O43752 255 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 PTGER2P43116 358 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 DACT2Q5SW24 774 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 LARP1BQ659C4 914 aaKnown RBP16.37■□□□□ 0.21
SMPD4-219ENST00000491128 CMTR1Q8N1G2 835 aaKnown RBP16.37■□□□□ 0.21
SMPD4-219ENST00000491128 CCDC82Q8N4S0 544 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 QSER1Q2KHR3 1735 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 SNED1Q8TER0 1413 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 FAM173BQ6P4H8 233 aa16.37■□□□□ 0.21
SMPD4-219ENST00000491128 DDX4Q9NQI0 724 aaKnown RBP16.37■□□□□ 0.21
SMPD4-219ENST00000491128 USP17L3A6NCW0 530 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 USP17L4A6NCW7 530 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 UBE2Q2LH0YL09 131 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 POLR3DP05423 398 aaPredicted RBP16.36■□□□□ 0.21
SMPD4-219ENST00000491128 PPP4CP60510 307 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 GUCY1B3Q02153 619 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 USP17L1Q7RTZ2 530 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 NSUN7Q8NE18 718 aaKnown RBP16.36■□□□□ 0.21
SMPD4-219ENST00000491128 SGIP1Q9BQI5 828 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 KRT23Q9C075 422 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 GJB4Q9NTQ9 266 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 PTPDC1A2A3K4 754 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 NFIAQ12857 509 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 DALRD3Q5D0E6 543 aaKnown RBP16.36■□□□□ 0.21
SMPD4-219ENST00000491128 CDC37L1Q7L3B6 337 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 USP40Q9NVE5 1235 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 FLT1P17948 1338 aa16.36■□□□□ 0.21
SMPD4-219ENST00000491128 CDC27P30260 824 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 CNNM2Q9H8M5 875 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 ANAPC4Q9UJX5 808 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 CRKP46108 304 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 TCP10Q12799 353 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 C12orf60Q5U649 245 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 STRIP1Q5VSL9 837 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 APOBEC3HQ6NTF7 200 aaKnown RBP16.35■□□□□ 0.21
SMPD4-219ENST00000491128 APOA5Q6Q788 366 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 ZFPM1Q8IX07 1006 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 ZNF274Q96GC6 653 aaPredicted RBP16.35■□□□□ 0.21
SMPD4-219ENST00000491128 GZF1Q9H116 711 aaPredicted RBP16.35■□□□□ 0.21
SMPD4-219ENST00000491128 RNF41Q9H4P4 317 aaPredicted RBP16.35■□□□□ 0.21
SMPD4-219ENST00000491128 GAKO14976 1311 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 TNKSO95271 1327 aa16.35■□□□□ 0.21
SMPD4-219ENST00000491128 TGFB2P61812 414 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 RTKN2Q8IZC4 609 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 NUP133Q8WUM0 1156 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 ESR2Q92731 530 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 PHKBQ93100 1093 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 UBAC1Q9BSL1 405 aa16.34■□□□□ 0.21
SMPD4-219ENST00000491128 ARPP21Q9UBL0 812 aaPredicted RBP16.34■□□□□ 0.21
SMPD4-219ENST00000491128 MTMR7Q9Y216 660 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms