RNA–Protein interactions for RNA: ENST00000489111.1

USP11-211, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 516 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-211ENST00000489111 USP40Q9NVE5 1235 aa11.83□□□□□ -0.52
USP11-211ENST00000489111 HDAC9Q9UKV0 1011 aa11.83□□□□□ -0.52
USP11-211ENST00000489111 FLT1P17948 1338 aa11.83□□□□□ -0.52
USP11-211ENST00000489111 CYP2D7A0A087X1C5 515 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 B4E1Z4 1266 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 POLR3DP05423 398 aaPredicted RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 VIL1P09327 827 aaKnown RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 RHBDL3P58872 404 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 EXOSC10Q01780 885 aaKnown RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 TOB2Q14106 344 aaPredicted RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 SART3Q15020 963 aaKnown RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 STK11IPQ8N1F8 1099 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 ESR2Q92731 530 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 BRF1Q92994 677 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 LARP6Q9BRS8 491 aaKnown RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 LRRC2Q9BYS8 371 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 SAP30BPQ9UHR5 308 aaKnown RBP11.82□□□□□ -0.52
USP11-211ENST00000489111 TIAM2Q8IVF5 1701 aa11.82□□□□□ -0.52
USP11-211ENST00000489111 COL4A5P29400 1685 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 KDM4AO75164 1064 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 USP17L8P0C7I0 530 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 CYP2D6P10635 497 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 EIF6P56537 245 aaKnown RBP11.81□□□□□ -0.52
USP11-211ENST00000489111 CXCL9Q07325 125 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 PDE4BQ07343 736 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 PICALMQ13492 652 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 CUL4AQ13619 759 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 COL9A3Q14050 684 aaPredicted RBP11.81□□□□□ -0.52
USP11-211ENST00000489111 APOBEC3HQ6NTF7 200 aaKnown RBP11.81□□□□□ -0.52
USP11-211ENST00000489111 CDC42EP5Q6NZY7 148 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 ARHGAP27Q6ZUM4 889 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 CHST3Q7LGC8 479 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 AGBL3Q8NEM8 1001 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 SYT17Q9BSW7 474 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 ZNF287Q9HBT7 754 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 TMOD2Q9NZR1 351 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 TPCN1Q9ULQ1 816 aa11.81□□□□□ -0.52
USP11-211ENST00000489111 NAP1L2Q9ULW6 460 aaPredicted RBP11.81□□□□□ -0.52
USP11-211ENST00000489111 MYO5AQ9Y4I1 1855 aaKnown RBP11.8□□□□□ -0.52
USP11-211ENST00000489111 ROBO3Q96MS0 1386 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 ERICH2A1L162 156 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 ANTXR2P58335 489 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 SLC4A8Q2Y0W8 1093 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 CFAP100Q494V2 611 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 TMEM67Q5HYA8 995 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 C12orf60Q5U649 245 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 INTS4Q96HW7 963 aaKnown RBP11.8□□□□□ -0.52
USP11-211ENST00000489111 TMEM87BQ96K49 555 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 UBAC1Q9BSL1 405 aa11.8□□□□□ -0.52
USP11-211ENST00000489111 CWC22Q9HCG8 908 aaKnown RBP11.8□□□□□ -0.52
USP11-211ENST00000489111 MKRN1Q9UHC7 482 aaKnown RBP11.8□□□□□ -0.52
USP11-211ENST00000489111 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.8□□□□□ -0.52
USP11-211ENST00000489111 IFIT3O14879 490 aaKnown RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 ORC4O43929 436 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 RANBP6O60518 1105 aaKnown RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 WDHD1O75717 1129 aaPredicted RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 LARGE1O95461 756 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 LMNB1P20700 586 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 RPS12P25398 132 aaKnown RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 NT5C2P49902 561 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 APOBRQ0VD83 1088 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 DLGAP5Q15398 846 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 ME3Q16798 604 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 NFXL1Q6ZNB6 911 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 CYB5R4Q7L1T6 521 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 CCDC83Q8IWF9 413 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 FBXL16Q8N461 479 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 CHMP4CQ96CF2 233 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 GMLQ99445 158 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 AGXT2Q9BYV1 514 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 INCENPQ9NQS7 918 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 CHMP5Q9NZZ3 219 aa11.79□□□□□ -0.52
USP11-211ENST00000489111 CIZ1Q9ULV3 898 aaPredicted RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 ANGEL1Q9UNK9 670 aaKnown RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 ZBTB12Q9Y330 459 aaPredicted RBP11.79□□□□□ -0.52
USP11-211ENST00000489111 BRCA1P38398 1863 aaKnown RBP11.78□□□□□ -0.52
USP11-211ENST00000489111 KLF18A0A0U1RQI7 1052 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 GOLGA8BA8MQT2 603 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 SH2B2O14492 632 aaPredicted RBP11.78□□□□□ -0.52
USP11-211ENST00000489111 PRDM1O75626 825 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 HLA-DOAP06340 250 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 MMP14P50281 582 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 STK3Q13188 491 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 TTC6Q86TZ1 520 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 IQCA1Q86XH1 822 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 MTA3Q9BTC8 594 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 MKNK2Q9HBH9 465 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 SMC3Q9UQE7 1217 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP11-211ENST00000489111 TACC3Q9Y6A5 838 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 LAMA4Q16363 1823 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 CCDC88AQ3V6T2 1871 aa11.78□□□□□ -0.52
USP11-211ENST00000489111 SPDYE2BA6NHP3 402 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 CCDC69A6NI79 296 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 TSPY2A6NKD2 308 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 FZD9O00144 591 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 MYO1BO43795 1136 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 FGRP09769 529 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 SPDYE6P0CI01 402 aa11.77□□□□□ -0.53
USP11-211ENST00000489111 NECAB1Q8N987 351 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms