RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CCDC69A6NI79 296 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 PRDM1O75626 825 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 YEATS4O95619 227 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 SHC4Q6S5L8 630 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 LINC00116Q8NCU8 138 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 CHMP4CQ96CF2 233 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 C16orf45Q96MC5 204 aaPredicted RBP22.14■■□□□ 1.14
VIM-203ENST00000469543 RAI14Q9P0K7 980 aa22.14■■□□□ 1.14
VIM-203ENST00000469543 RRP9O43818 475 aaKnown RBP22.14■■□□□ 1.13
VIM-203ENST00000469543 DYNLL1P63167 89 aaKnown RBP22.14■■□□□ 1.13
VIM-203ENST00000469543 SLC39A14Q15043 492 aa22.14■■□□□ 1.13
VIM-203ENST00000469543 SGMS1Q86VZ5 419 aa22.14■■□□□ 1.13
VIM-203ENST00000469543 CELF1Q92879 486 aaKnown RBP22.14■■□□□ 1.13
VIM-203ENST00000469543 ALX1Q15699 326 aa22.14■■□□□ 1.13
VIM-203ENST00000469543 PARP10Q53GL7 1025 aa22.13■■□□□ 1.13
VIM-203ENST00000469543 AK7Q96M32 723 aa22.13■■□□□ 1.13
VIM-203ENST00000469543 C4AP0C0L4 1744 aa22.13■■□□□ 1.13
VIM-203ENST00000469543 C4BP0C0L5 1744 aa22.13■■□□□ 1.13
VIM-203ENST00000469543 ATP2B1P20020 1258 aa22.13■■□□□ 1.13
VIM-203ENST00000469543 GRIN1Q05586 938 aa22.13■■□□□ 1.13
VIM-203ENST00000469543 PTPAQ15257 358 aa22.12■■□□□ 1.13
VIM-203ENST00000469543 PTPN21Q16825 1174 aa22.12■■□□□ 1.13
VIM-203ENST00000469543 MYRIPQ8NFW9 859 aa22.12■■□□□ 1.13
VIM-203ENST00000469543 ZNF384Q8TF68 577 aa22.12■■□□□ 1.13
VIM-203ENST00000469543 MAP3K14Q99558 947 aa22.12■■□□□ 1.13
VIM-203ENST00000469543 SLC3A2P08195 630 aaKnown RBP22.12■■□□□ 1.13
VIM-203ENST00000469543 SLC4A8Q2Y0W8 1093 aa22.12■■□□□ 1.13
VIM-203ENST00000469543 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.12■■□□□ 1.13
VIM-203ENST00000469543 NR5A1Q13285 461 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 CEP57L1Q8IYX8 460 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 SPATA31A5Q5VU36 1347 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 SPATA31A7Q8IWB4 1347 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 DDX60Q8IY21 1712 aaKnown RBP22.11■■□□□ 1.13
VIM-203ENST00000469543 USP27XA6NNY8 438 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 CMA1P23946 247 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 GTF2E1P29083 439 aaPredicted RBP22.11■■□□□ 1.13
VIM-203ENST00000469543 LIFRP42702 1097 aa22.11■■□□□ 1.13
VIM-203ENST00000469543 FOXN1O15353 648 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 CDKL5O76039 1030 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 SSRP1Q08945 709 aaKnown RBP22.1■■□□□ 1.13
VIM-203ENST00000469543 PNOCQ13519 176 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 TBC1D9BQ66K14 1250 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 CPLX2Q6PUV4 134 aaKnown RBP22.1■■□□□ 1.13
VIM-203ENST00000469543 SRP68Q9UHB9 627 aaKnown RBP22.1■■□□□ 1.13
VIM-203ENST00000469543 TPM3P06753 285 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 PPARAQ07869 468 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 WTAPQ15007 396 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 AMIGO3Q86WK7 504 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 LRRC8AQ8IWT6 810 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 NACAP1Q9BZK3 213 aa22.1■■□□□ 1.13
VIM-203ENST00000469543 CAVIN2O95810 425 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 TOB1P50616 345 aaPredicted RBP22.09■■□□□ 1.13
VIM-203ENST00000469543 OXER1Q8TDS5 423 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 MINPP1Q9UNW1 487 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 BAZ2BQ9UIF8 2168 aaKnown RBP22.09■■□□□ 1.13
VIM-203ENST00000469543 U2AF2P26368 475 aaKnown RBP eCLIP22.09■■□□□ 1.13
VIM-203ENST00000469543 SYKP43405 635 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 TRIM29Q14134 588 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 ANKRD18AQ8IVF6 992 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 TFCP2L1Q9NZI6 479 aa22.09■■□□□ 1.13
VIM-203ENST00000469543 COL1A1P02452 1464 aaPredicted RBP22.08■■□□□ 1.13
VIM-203ENST00000469543 DYNC1I1O14576 645 aa22.08■■□□□ 1.13
VIM-203ENST00000469543 LONRF3Q496Y0 759 aa22.08■■□□□ 1.13
VIM-203ENST00000469543 SARM1Q6SZW1 724 aa22.08■■□□□ 1.13
VIM-203ENST00000469543 NBPF11Q86T75 865 aa22.08■■□□□ 1.13
VIM-203ENST00000469543 FOXP4Q8IVH2 680 aaPredicted RBP22.08■■□□□ 1.13
VIM-203ENST00000469543 FAM84BQ96KN1 310 aaPredicted RBP22.08■■□□□ 1.13
VIM-203ENST00000469543 KRT23Q9C075 422 aa22.08■■□□□ 1.13
VIM-203ENST00000469543 RIOK3O14730 519 aaKnown RBP22.08■■□□□ 1.12
VIM-203ENST00000469543 ZRSR1Q15695 479 aaKnown RBP22.08■■□□□ 1.12
VIM-203ENST00000469543 ARHGAP30Q7Z6I6 1101 aaPredicted RBP22.08■■□□□ 1.12
VIM-203ENST00000469543 STAG1Q8WVM7 1258 aa22.08■■□□□ 1.12
VIM-203ENST00000469543 SHISA4Q96DD7 197 aa22.08■■□□□ 1.12
VIM-203ENST00000469543 CDCA7Q9BWT1 371 aaPredicted RBP22.08■■□□□ 1.12
VIM-203ENST00000469543 LRP5O75197 1615 aa22.08■■□□□ 1.12
VIM-203ENST00000469543 LMOD1P29536 600 aaPredicted RBP22.07■■□□□ 1.12
VIM-203ENST00000469543 DIS3L2Q8IYB7 885 aaKnown RBP22.07■■□□□ 1.12
VIM-203ENST00000469543 MAGEB6P1A0A0J9YX57 407 aa22.07■■□□□ 1.12
VIM-203ENST00000469543 FMNL1O95466 1100 aaPredicted RBP22.07■■□□□ 1.12
VIM-203ENST00000469543 ATP1A3P13637 1013 aa22.07■■□□□ 1.12
VIM-203ENST00000469543 RTN1Q16799 776 aa22.07■■□□□ 1.12
VIM-203ENST00000469543 HSP90AA4PQ58FG1 418 aa22.07■■□□□ 1.12
VIM-203ENST00000469543 CNNM2Q9H8M5 875 aa22.07■■□□□ 1.12
VIM-203ENST00000469543 THRAP3Q9Y2W1 955 aaKnown RBP22.07■■□□□ 1.12
VIM-203ENST00000469543 FAM205CA6NFA0 338 aa22.06■■□□□ 1.12
VIM-203ENST00000469543 MRFAP1L1Q96HT8 127 aa22.06■■□□□ 1.12
VIM-203ENST00000469543 CDC5LQ99459 802 aaKnown RBP22.06■■□□□ 1.12
VIM-203ENST00000469543 BCL2L12Q9HB09 334 aa22.06■■□□□ 1.12
VIM-203ENST00000469543 PNPLA7Q6ZV29 1317 aa22.06■■□□□ 1.12
VIM-203ENST00000469543 IFNAR1P17181 557 aa22.06■■□□□ 1.12
VIM-203ENST00000469543 FANCBQ8NB91 859 aa22.06■■□□□ 1.12
VIM-203ENST00000469543 RIOK1Q9BRS2 568 aaKnown RBP22.06■■□□□ 1.12
VIM-203ENST00000469543 XPO4Q9C0E2 1151 aaKnown RBP22.06■■□□□ 1.12
VIM-203ENST00000469543 TRMT1Q9NXH9 659 aaKnown RBP22.06■■□□□ 1.12
VIM-203ENST00000469543 NMT2O60551 498 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 NOSTRINQ8IVI9 506 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 ZNF710Q8N1W2 664 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 PRIMPOLQ96LW4 560 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 IFNKQ9P0W0 207 aa22.05■■□□□ 1.12
VIM-203ENST00000469543 PCDHB6Q9Y5E3 794 aa22.05■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms