RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	ADORA1	P30542	326 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	SF3B3	Q15393	1217 aa	Known RBP	13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	KRT25	Q7Z3Z0	450 aa		13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	COL5A2	P05997	1499 aa	Predicted RBP	13.44	□□□□□ -0.26
RBM39-223	ENST00000463004	GTF2I	P78347	998 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	TMEM132A	Q24JP5	1023 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	ZSCAN30	Q86W11	494 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	ZNF592	Q92610	1267 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	CTAGE1	Q96RT6	745 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	TTF2	Q9UNY4	1162 aa	Known RBP	13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	ZMYM6	O95789	1325 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	SFPQ	P23246	707 aa	Known RBP eCLIP	13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	FOXO4	P98177	505 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	MTERF4	Q7Z6M4	381 aa	Known RBP	13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	ELP1	O95163	1332 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	CSF1R	P07333	972 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	CUL4A	Q13619	759 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	TTLL5	Q6EMB2	1281 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	MARCH10	Q8NA82	808 aa	Predicted RBP	13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	GDPD2	Q9HCC8	539 aa		13.43	□□□□□ -0.26
RBM39-223	ENST00000463004	EPHA10	Q5JZY3	1008 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	CHST3	Q7LGC8	479 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	RAB11FIP4	Q86YS3	637 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	IQUB	Q8NA54	791 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	TANGO6	Q9C0B7	1094 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	USP17L12	C9JPN9	530 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	USP17L21	D6R901	530 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	CUTA	O60888	179 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	RTKN2	Q8IZC4	609 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	EDC3	Q96F86	508 aa	Known RBP	13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	ACBD3	Q9H3P7	528 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	MEGF6	O75095	1541 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	PLCD1	P51178	756 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	KRT79	Q5XKE5	535 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	ZNF654	Q8IZM8	581 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	SEC31B	Q9NQW1	1179 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	USP40	Q9NVE5	1235 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	TLR7	Q9NYK1	1049 aa	Known RBP	13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	ABCC6	O95255	1503 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	FAM160A1	Q05DH4	1040 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	DTHD1	Q6ZMT9	781 aa		13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.42	□□□□□ -0.26
RBM39-223	ENST00000463004	ZSCAN12	O43309	604 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	STAT6	P42226	847 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	ALX1	Q15699	326 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	ANO1	Q5XXA6	986 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	FERMT2	Q96AC1	680 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	DACT1	Q9NYF0	836 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	RCAN1	P53805	252 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	TFAP4	Q01664	338 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	CCDC93	Q567U6	631 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	SUGT1	Q9Y2Z0	365 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	RDX	P35241	583 aa	Known RBP	13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	NAP1L1	P55209	391 aa	Known RBP	13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	BRIP1	Q9BX63	1249 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	TNS2	Q63HR2	1409 aa		13.41	□□□□□ -0.26
RBM39-223	ENST00000463004	PRKCSH	P14314	528 aa	Predicted RBP	13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	CETN1	Q12798	172 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	CKAP2L	Q8IYA6	745 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	TGFBRAP1	Q8WUH2	860 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	DHX36	Q9H2U1	1008 aa	Known RBP	13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	DEF6	Q9H4E7	631 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	MYO6	Q9UM54	1294 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	TOP1	P11387	765 aa	Known RBP	13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	PDIA6	Q15084	440 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	EXOC1	Q9NV70	894 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	GOLGA6L9	A6NEM1	432 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	ESPN	B1AK53	854 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	CPA1	P15085	419 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	NECTIN1	Q15223	517 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	DCAF15	Q66K64	600 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	ARHGEF1	Q92888	912 aa	Known RBP	13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	MYO3B	Q8WXR4	1341 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	hCG_1984214	I3L0E3	225 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	ME3	Q16798	604 aa		13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	ZNF713	Q8N859	430 aa	Predicted RBP	13.4	□□□□□ -0.26
RBM39-223	ENST00000463004	SAP30BP	Q9UHR5	308 aa	Known RBP	13.4	□□□□□ -0.26
RBM39-223	ENST00000463004		H7C1D1	291 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	LIFR	P42702	1097 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	BTD	P43251	543 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	CTDSPL2	Q05D32	466 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	SPC24	Q8NBT2	197 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	PICK1	Q9NRD5	415 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	XRN1	Q8IZH2	1706 aa	Known RBP	13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	PSMA7	O14818	248 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	CAMTA2	O94983	1202 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	TXNRD1	Q16881	649 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	MAPKAPK5	Q8IW41	473 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	DIS3L2	Q8IYB7	885 aa	Known RBP	13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	CCDC150	Q8NCX0	1101 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	CRAMP1	Q96RY5	1269 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	GOPC	Q9HD26	462 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	SRP68	Q9UHB9	627 aa	Known RBP	13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	SLIT3	O75094	1523 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	TBCA	O75347	108 aa	Known RBP	13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	RRAGB	Q5VZM2	374 aa		13.39	□□□□□ -0.27
RBM39-223	ENST00000463004	VPS36	Q86VN1	386 aa		13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms