RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 SLC9C2Q5TAH2 1124 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 NCOA7Q8NI08 942 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 PHLPP1O60346 1717 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 RGL2O15211 777 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 MCM6Q14566 821 aa7.05□□□□□ -1.28
VPS13D-202ENST00000460333 RC3H1Q5TC82 1133 aaKnown RBP7.05□□□□□ -1.28
VPS13D-202ENST00000460333 RPS6KA4O75676 772 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 RPS6KB1P23443 525 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ARHGAP25P42331 645 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 SMC1AQ14683 1233 aaKnown RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 CCDC121Q6ZUS5 278 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ZNF34Q8IZ26 560 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ZGPATQ8N5A5 531 aaKnown RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 FAM76AQ8TAV0 307 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 AFAP1L1Q8TED9 768 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ABCF2Q9UG63 623 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 A0A0D9SFI3 127 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 NEFHP12036 1026 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 CASP7P55210 303 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 DHX32Q7L7V1 743 aaKnown RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 KRT27Q7Z3Y8 459 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 TRIM22Q8IYM9 498 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ARFGAP2Q8N6H7 521 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 GJD4Q96KN9 370 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 PUS3Q9BZE2 481 aaKnown RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ZSWIM6Q9HCJ5 1215 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ZNF219Q9P2Y4 722 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 GCOM1H8Y6P7 765 aaPredicted RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 MYZAPP0CAP1 466 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ZNF75DP51815 510 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 EVCP57679 992 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ELF2Q15723 593 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 SYT10Q6XYQ8 523 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 LRP10Q7Z4F1 713 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 SPATS2Q86XZ4 545 aaKnown RBP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 JDP2Q8WYK2 163 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ANKIB1Q9P2G1 1089 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.04□□□□□ -1.28
VPS13D-202ENST00000460333 DENND2AQ9ULE3 1009 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 CTAGE9A4FU28 777 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 PTH1RQ03431 593 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ZMYM1Q5SVZ6 1142 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 MSL1Q68DK7 614 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ATL3Q6DD88 541 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 ATG9AQ7Z3C6 839 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 KIF2CQ99661 725 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 PALD1Q9ULE6 856 aa7.04□□□□□ -1.28
VPS13D-202ENST00000460333 TAF5LO75529 589 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 SYT1P21579 422 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 SUSD4Q5VX71 490 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 KANK3Q6NY19 840 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 GAS2L3Q86XJ1 694 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 ALS2CR12Q96Q35 445 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 NSRP1Q9H0G5 558 aaKnown RBP7.03□□□□□ -1.28
VPS13D-202ENST00000460333 CNNM2Q9H8M5 875 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 AFF2P51816 1311 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 BRD2P25440 801 aaKnown RBP7.03□□□□□ -1.28
VPS13D-202ENST00000460333 OAS2P29728 719 aaKnown RBP7.03□□□□□ -1.28
VPS13D-202ENST00000460333 INPP5BP32019 993 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 HELBQ8NG08 1087 aaPredicted RBP7.03□□□□□ -1.28
VPS13D-202ENST00000460333 DACT1Q9NYF0 836 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 TCEAL9Q9UHQ7 104 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 DISP2A7MBM2 1401 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 CNTNAP4Q9C0A0 1308 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 ZAP70P43403 619 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 UBASH3AP57075 661 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 CUL4AQ13619 759 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 BRD3Q15059 726 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 SLF2Q8IX21 1173 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 STK11IPQ8N1F8 1099 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 CNBD1Q8NA66 436 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 CTAGE1Q96RT6 745 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 DNAJC25Q9H1X3 360 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 NARFQ9UHQ1 456 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.03□□□□□ -1.288e-7■□□□□ 8.7
VPS13D-202ENST00000460333 LDHCP07864 332 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 PPP2R3AQ06190 1150 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 UBE4AQ14139 1066 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 GPR161Q8N6U8 529 aaKnown RBP7.03□□□□□ -1.28
VPS13D-202ENST00000460333 SPATA5Q8NB90 893 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 KRT23Q9C075 422 aa7.03□□□□□ -1.28
VPS13D-202ENST00000460333 ADRA2BP18089 450 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 NECTIN1Q15223 517 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 UBE3CQ15386 1083 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 ENOX2Q16206 610 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 CCDC102BQ68D86 513 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 Q6ZUG5 572 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 SEPT12Q8IYM1 358 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 SETSIPP0DME0 302 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 GSTO1P78417 241 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 FNBP4Q8N3X1 1017 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 EDC3Q96F86 508 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 PYM1Q9BRP8 204 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 CAMTA2O94983 1202 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 LMOD1P29536 600 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 RPS8P62241 208 aaKnown RBP7.02□□□□□ -1.29
VPS13D-202ENST00000460333 LRCH2Q5VUJ6 765 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 USPL1Q5W0Q7 1092 aa7.02□□□□□ -1.29
VPS13D-202ENST00000460333 ANKS4BQ8N8V4 417 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms