RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 C10orf71Q711Q0 1435 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 DUOX1Q9NRD9 1551 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 DYNC1I1O14576 645 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 ZBTB7AO95365 584 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 SSR1P43307 286 aaKnown RBP12.15□□□□□ -0.46
HERC4-207ENST00000460168 TOB2Q14106 344 aaPredicted RBP12.15□□□□□ -0.46
HERC4-207ENST00000460168 ZKSCAN8Q15776 578 aaPredicted RBP12.15□□□□□ -0.46
HERC4-207ENST00000460168 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.15□□□□□ -0.46
HERC4-207ENST00000460168 Q6ZUG5 572 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 NCOA7Q8NI08 942 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 EYA3Q99504 573 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 LRRC2Q9BYS8 371 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 COA1Q9GZY4 146 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 AATFQ9NY61 560 aaKnown RBP eCLIP12.15□□□□□ -0.46
HERC4-207ENST00000460168 TPCN1Q9ULQ1 816 aa12.15□□□□□ -0.46
HERC4-207ENST00000460168 SLX4Q8IY92 1834 aa12.15□□□□□ -0.47
HERC4-207ENST00000460168 LARGE1O95461 756 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 DYNLL1P63167 89 aaKnown RBP12.14□□□□□ -0.47
HERC4-207ENST00000460168 ME3Q16798 604 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 MFSD14BQ5SR56 506 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.14□□□□□ -0.47
HERC4-207ENST00000460168 TULP2O00295 520 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 GSTO1P78417 241 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 CCDC83Q8IWF9 413 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 TBC1D22AQ8WUA7 517 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 FBXW7Q969H0 707 aa12.14□□□□□ -0.47
HERC4-207ENST00000460168 MYCBPQ99417 103 aaPredicted RBP12.14□□□□□ -0.47
HERC4-207ENST00000460168 MCM5P33992 734 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 GTF2IP78347 998 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 NUCB2P80303 420 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 CHST3Q7LGC8 479 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 TBC1D10CQ8IV04 446 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 BRF1Q92994 677 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 FSD2A1L4K1 749 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 XRCC6P12956 609 aaKnown RBP eCLIP12.13□□□□□ -0.47
HERC4-207ENST00000460168 EXOSC10Q01780 885 aaKnown RBP12.13□□□□□ -0.47
HERC4-207ENST00000460168 RAB3GAP1Q15042 981 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 DIXDC1Q155Q3 683 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 DOK7Q18PE1 504 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 NOL10Q9BSC4 688 aaKnown RBP12.13□□□□□ -0.47
HERC4-207ENST00000460168 CRNKL1Q9BZJ0 848 aaKnown RBP12.13□□□□□ -0.47
HERC4-207ENST00000460168 NBPF3Q9H094 633 aa12.13□□□□□ -0.47
HERC4-207ENST00000460168 POLD1P28340 1107 aa12.12□□□□□ -0.47
HERC4-207ENST00000460168 STK3Q13188 491 aa12.12□□□□□ -0.47
HERC4-207ENST00000460168 GRIK5Q16478 980 aa12.12□□□□□ -0.47
HERC4-207ENST00000460168 CT47A1Q5JQC4 288 aaPredicted RBP12.12□□□□□ -0.47
HERC4-207ENST00000460168 RINLQ6ZS11 566 aa12.12□□□□□ -0.47
HERC4-207ENST00000460168 NECAB1Q8N987 351 aa12.12□□□□□ -0.47
HERC4-207ENST00000460168 RBM28Q9NW13 759 aaKnown RBP12.12□□□□□ -0.47
HERC4-207ENST00000460168 ATF5Q9Y2D1 282 aaPredicted RBP12.12□□□□□ -0.47
HERC4-207ENST00000460168 MINDY4BA8MYZ0 360 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 LDHCP07864 332 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 CCDC172P0C7W6 258 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 CTDSPL2Q05D32 466 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 R3HDM1Q15032 1099 aaKnown RBP12.11□□□□□ -0.47
HERC4-207ENST00000460168 MB21D2Q8IYB1 491 aaPredicted RBP12.11□□□□□ -0.47
HERC4-207ENST00000460168 TTLL6Q8N841 843 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 TNPO1Q92973 898 aaKnown RBP12.11□□□□□ -0.47
HERC4-207ENST00000460168 MTFR1LQ9H019 292 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 TOMM22Q9NS69 142 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 SMC3Q9UQE7 1217 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 KIAA1551Q9HCM1 1747 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 CHD4Q14839 1912 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 FAM205AQ6ZU69 1335 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 PRC1O43663 620 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 C21orf2O43822 256 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 BAG3O95817 575 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 PKP1Q13835 747 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 MFSD6Q6ZSS7 791 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 DBNDD1Q9H9R9 158 aa12.11□□□□□ -0.47
HERC4-207ENST00000460168 MYH2Q9UKX2 1941 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 NEDD4P46934 1319 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 B4E1Z4 1266 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 PPARAQ07869 468 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 APOBRQ0VD83 1088 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 AKNAD1Q5T1N1 836 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 GIMAP6Q6P9H5 292 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 SLF2Q8IX21 1173 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 STK11IPQ8N1F8 1099 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 C7orf43Q8WVR3 580 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 AGXT2Q9BYV1 514 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 CNNM2Q9H8M5 875 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 DLEC1Q9Y238 1755 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 BAZ2AQ9UIF9 1905 aaKnown RBP12.1□□□□□ -0.47
HERC4-207ENST00000460168 MROH7-TTC4A0A0A0MT08 1334 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 DPEP1P16444 411 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 RRP12Q5JTH9 1297 aaKnown RBP12.1□□□□□ -0.47
HERC4-207ENST00000460168 PODNQ7Z5L7 613 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 UPF1Q92900 1129 aaKnown RBP eCLIP12.1□□□□□ -0.47
HERC4-207ENST00000460168 SGSM3Q96HU1 749 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 NCAPGQ9BPX3 1015 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 RNF41Q9H4P4 317 aaPredicted RBP12.1□□□□□ -0.47
HERC4-207ENST00000460168 DCP1AQ9NPI6 582 aaPredicted RBP12.1□□□□□ -0.47
HERC4-207ENST00000460168 ATP8A2Q9NTI2 1148 aa12.1□□□□□ -0.47
HERC4-207ENST00000460168 EXOC8Q8IYI6 725 aa12.09□□□□□ -0.47
HERC4-207ENST00000460168 STAG1Q8WVM7 1258 aa12.09□□□□□ -0.47
HERC4-207ENST00000460168 RTFDC1Q9BY42 306 aaPredicted RBP12.09□□□□□ -0.47
HERC4-207ENST00000460168 KRT23Q9C075 422 aa12.09□□□□□ -0.47
HERC4-207ENST00000460168 INCENPQ9NQS7 918 aa12.09□□□□□ -0.47
HERC4-207ENST00000460168 PPP1R1BQ9UD71 204 aaPredicted RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms